Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.57□□□□□ -2
LIMA1Q9UHB6 RPL23AP95-201ENST00000426806 265 ntBASIC2.57□□□□□ -2
LIMA1Q9UHB6 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC2.57□□□□□ -2
LIMA1Q9UHB6 RPL32P28-201ENST00000443577 397 ntBASIC2.57□□□□□ -2
LIMA1Q9UHB6 RPS3P1-201ENST00000456781 192 ntBASIC2.57□□□□□ -2
LIMA1Q9UHB6 RPL9P9-202ENST00000466501 579 ntBASIC2.57□□□□□ -2
LIMA1Q9UHB6 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.57□□□□□ -2
LIMA1Q9UHB6 AC096745.1-201ENST00000509945 370 ntBASIC2.57□□□□□ -2
LIMA1Q9UHB6 AC025465.4-201ENST00000513422 638 ntBASIC2.57□□□□□ -2
LIMA1Q9UHB6 SNORA31.11-201ENST00000516528 139 ntBASIC2.57□□□□□ -2
LIMA1Q9UHB6 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.57□□□□□ -2
LIMA1Q9UHB6 AP000889.2-201ENST00000532684 490 ntBASIC2.57□□□□□ -2
LIMA1Q9UHB6 IMMP1LP2-201ENST00000552954 492 ntBASIC2.57□□□□□ -2
LIMA1Q9UHB6 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.57□□□□□ -2
LIMA1Q9UHB6 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC2.57□□□□□ -2
LIMA1Q9UHB6 MIR3672-201ENST00000584290 82 ntBASIC2.57□□□□□ -2
LIMA1Q9UHB6 MIR3942-201ENST00000585264 109 ntBASIC2.57□□□□□ -2
LIMA1Q9UHB6 AC093913.1-201ENST00000614178 329 ntBASIC2.57□□□□□ -2
LIMA1Q9UHB6 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC2.57□□□□□ -2
LIMA1Q9UHB6 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.56□□□□□ -2
LIMA1Q9UHB6 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.56□□□□□ -2
LIMA1Q9UHB6 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.56□□□□□ -2
LIMA1Q9UHB6 RNU6-1317P-201ENST00000364582 104 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 RNA5SP240-201ENST00000365355 128 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 RNU6-831P-201ENST00000384548 107 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 RNU6-325P-201ENST00000411132 105 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 AL030996.1-201ENST00000411430 235 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.56□□□□□ -2
LIMA1Q9UHB6 AL161788.1-201ENST00000441805 169 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 MTND5P20-201ENST00000448677 143 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 MTND3P10-201ENST00000450967 341 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 AL353752.1-201ENST00000454946 260 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 PMCHL2-203ENST00000457791 237 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 AC091951.2-201ENST00000500762 203 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 AC010486.1-201ENST00000511793 424 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 RNU5F-2P-201ENST00000516066 82 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 RNU6-864P-201ENST00000516256 108 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 AC107953.1-201ENST00000522216 297 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.56□□□□□ -2
LIMA1Q9UHB6 HSPE1P4-201ENST00000550617 308 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 EIF4BP1-201ENST00000554881 351 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.56□□□□□ -2
LIMA1Q9UHB6 MIR4319-201ENST00000577285 85 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.56□□□□□ -2
LIMA1Q9UHB6 AC023043.2-201ENST00000589678 1026 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 AC009994.1-201ENST00000606889 253 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 AC008121.3-201ENST00000618726 433 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 AC090517.3-201ENST00000625170 141 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.56□□□□□ -2
LIMA1Q9UHB6 ZNF720P1-201ENST00000562403 1939 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 AP000560.1-201ENST00000624150 1937 ntBASIC2.56□□□□□ -2
LIMA1Q9UHB6 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
LIMA1Q9UHB6 snoU2_19.1-201ENST00000362361 80 ntBASIC2.55□□□□□ -2
LIMA1Q9UHB6 Y_RNA.70-201ENST00000362886 110 ntBASIC2.55□□□□□ -2
LIMA1Q9UHB6 RNA5SP393-201ENST00000363423 117 ntBASIC2.55□□□□□ -2
LIMA1Q9UHB6 RNA5SP68-201ENST00000363885 119 ntBASIC2.55□□□□□ -2
LIMA1Q9UHB6 SNORA38-201ENST00000363946 132 ntBASIC2.55□□□□□ -2
LIMA1Q9UHB6 Y_RNA.212-201ENST00000364177 102 ntBASIC2.55□□□□□ -2
LIMA1Q9UHB6 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.55□□□□□ -2
LIMA1Q9UHB6 SNORA80E-201ENST00000384744 137 ntBASIC2.55□□□□□ -2
LIMA1Q9UHB6 MIR95-201ENST00000385072 81 ntBASIC2.55□□□□□ -2
LIMA1Q9UHB6 RN7SKP61-201ENST00000410642 295 ntBASIC2.55□□□□□ -2
LIMA1Q9UHB6 PDCL2P1-201ENST00000419302 352 ntBASIC2.55□□□□□ -2
LIMA1Q9UHB6 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.55□□□□□ -2
LIMA1Q9UHB6 AC244670.1-201ENST00000436879 112 ntBASIC2.55□□□□□ -2
LIMA1Q9UHB6 MTCO1P29-201ENST00000496868 288 ntBASIC2.55□□□□□ -2
LIMA1Q9UHB6 Y_RNA.702-201ENST00000516843 96 ntBASIC2.55□□□□□ -2
LIMA1Q9UHB6 RN7SKP256-201ENST00000517201 314 ntBASIC2.55□□□□□ -2
LIMA1Q9UHB6 RNU6-586P-201ENST00000517265 104 ntBASIC2.55□□□□□ -2
LIMA1Q9UHB6 AL355297.2-201ENST00000604792 129 ntBASIC2.55□□□□□ -2
LIMA1Q9UHB6 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.55□□□□□ -2
LIMA1Q9UHB6 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
LIMA1Q9UHB6 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.55□□□□□ -2
LIMA1Q9UHB6 AC005336.3-201ENST00000623833 2679 ntBASIC2.55□□□□□ -2
LIMA1Q9UHB6 AL008636.1-201ENST00000625038 1018 ntBASIC2.55□□□□□ -2
LIMA1Q9UHB6 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
LIMA1Q9UHB6 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.54□□□□□ -2
LIMA1Q9UHB6 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
LIMA1Q9UHB6 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.54□□□□□ -2
LIMA1Q9UHB6 RNU6-562P-201ENST00000362731 107 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 RNU6-227P-201ENST00000362865 103 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 Y_RNA.72-201ENST00000362894 103 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 SNORA80A-201ENST00000363922 136 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 RNU6-95P-201ENST00000384697 107 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
LIMA1Q9UHB6 AL590632.1-201ENST00000424289 371 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 MTND3P9-201ENST00000429526 346 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 RPS15AP28-201ENST00000435088 386 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 AC018634.1-201ENST00000437554 401 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 AC098614.3-201ENST00000438957 440 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 AL109933.2-201ENST00000452651 260 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 RNU7-187P-201ENST00000458985 68 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 RPS29P27-201ENST00000463711 170 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.54□□□□□ -2
LIMA1Q9UHB6 HMGB1P35-201ENST00000503360 598 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 AC091874.1-201ENST00000511402 339 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 RNU4-49P-201ENST00000516080 140 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 RNU6-875P-201ENST00000516488 106 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 RNU6-273P-201ENST00000516937 96 ntBASIC2.54□□□□□ -2
LIMA1Q9UHB6 SNORA48.11-201ENST00000517015 89 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms