Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC079600.2-201ENST00000550076 130 ntBASIC3.34□□□□□ -1.87
HLA-DOAP06340 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.34□□□□□ -1.87
HLA-DOAP06340 MIR4782-201ENST00000577987 79 ntBASIC3.34□□□□□ -1.87
HLA-DOAP06340 AL159153.1-201ENST00000619688 317 ntBASIC3.34□□□□□ -1.87
HLA-DOAP06340 AC006111.3-201ENST00000622137 383 ntBASIC3.34□□□□□ -1.87
HLA-DOAP06340 U2.21-201ENST00000637295 81 ntBASIC3.34□□□□□ -1.87
HLA-DOAP06340 U4.7-201ENST00000638126 106 ntBASIC3.34□□□□□ -1.87
HLA-DOAP06340 AL133412.1-201ENST00000380194 2992 ntBASIC3.34□□□□□ -1.87
HLA-DOAP06340 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HLA-DOAP06340 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
HLA-DOAP06340 AL136360.1-201ENST00000503377 1900 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 Y_RNA.19-201ENST00000362462 99 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 RNU6-778P-201ENST00000363269 103 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 RNU6-898P-201ENST00000365627 104 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 RNU6-72P-201ENST00000384285 79 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 Y_RNA.556-201ENST00000384677 113 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 MIR512-1-201ENST00000384913 84 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 MIR34A-201ENST00000385130 110 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 AL031121.1-201ENST00000406553 254 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 AL591034.1-201ENST00000407447 340 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 RNU6-121P-201ENST00000410525 99 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 RNU2-38P-201ENST00000410856 79 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.33□□□□□ -1.88
HLA-DOAP06340 TMEM167AP1-201ENST00000423409 219 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 AC073910.1-201ENST00000445047 438 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC3.33□□□□□ -1.88
HLA-DOAP06340 SNORD109B-201ENST00000458961 67 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 SNORD109A-201ENST00000459128 67 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 U8.22-201ENST00000459141 133 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 MTND4LP22-201ENST00000508209 276 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 RNU6-408P-201ENST00000515910 100 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 SNORA25.11-201ENST00000515935 105 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 RNU6-570P-201ENST00000517051 105 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 AC109329.1-201ENST00000518744 317 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 HSPE1P20-201ENST00000538133 289 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC3.33□□□□□ -1.88
HLA-DOAP06340 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.33□□□□□ -1.88
HLA-DOAP06340 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC3.33□□□□□ -1.88
HLA-DOAP06340 AC020895.1-201ENST00000595362 272 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 AP000787.2-201ENST00000604432 568 ntBASIC3.33□□□□□ -1.88
HLA-DOAP06340 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.33□□□□□ -1.88
HLA-DOAP06340 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HLA-DOAP06340 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HLA-DOAP06340 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.32□□□□□ -1.88
HLA-DOAP06340 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HLA-DOAP06340 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
HLA-DOAP06340 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.32□□□□□ -1.88
HLA-DOAP06340 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.32□□□□□ -1.88
HLA-DOAP06340 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
HLA-DOAP06340 Y_RNA.152-201ENST00000363578 100 ntBASIC3.32□□□□□ -1.88
HLA-DOAP06340 Y_RNA.405-201ENST00000383979 100 ntBASIC3.32□□□□□ -1.88
HLA-DOAP06340 Y_RNA.451-201ENST00000384200 100 ntBASIC3.32□□□□□ -1.88
HLA-DOAP06340 Y_RNA.477-201ENST00000384352 108 ntBASIC3.32□□□□□ -1.88
HLA-DOAP06340 Y_RNA.524-201ENST00000384564 100 ntBASIC3.32□□□□□ -1.88
HLA-DOAP06340 Y_RNA.551-201ENST00000384661 102 ntBASIC3.32□□□□□ -1.88
HLA-DOAP06340 Y_RNA.561-201ENST00000384694 100 ntBASIC3.32□□□□□ -1.88
HLA-DOAP06340 RNU6-713P-201ENST00000384761 107 ntBASIC3.32□□□□□ -1.88
HLA-DOAP06340 SNORA69.1-201ENST00000390904 137 ntBASIC3.32□□□□□ -1.88
HLA-DOAP06340 RNU6-700P-201ENST00000391043 107 ntBASIC3.32□□□□□ -1.88
HLA-DOAP06340 AL138827.1-201ENST00000402666 306 ntBASIC3.32□□□□□ -1.88
HLA-DOAP06340 RNU6ATAC23P-201ENST00000408448 123 ntBASIC3.32□□□□□ -1.88
HLA-DOAP06340 Y_RNA.592-201ENST00000410274 109 ntBASIC3.32□□□□□ -1.88
HLA-DOAP06340 RPL21P38-201ENST00000418090 167 ntBASIC3.32□□□□□ -1.88
HLA-DOAP06340 EIF4EP2-201ENST00000422816 654 ntBASIC3.32□□□□□ -1.88
HLA-DOAP06340 Z82188.1-201ENST00000436709 154 ntBASIC3.32□□□□□ -1.88
HLA-DOAP06340 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.32□□□□□ -1.88
HLA-DOAP06340 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.32□□□□□ -1.88
HLA-DOAP06340 AC098869.1-201ENST00000481627 292 ntBASIC3.32□□□□□ -1.88
HLA-DOAP06340 AC006445.2-201ENST00000510061 472 ntBASIC3.32□□□□□ -1.88
HLA-DOAP06340 RNU1-61P-201ENST00000516107 151 ntBASIC3.32□□□□□ -1.88
HLA-DOAP06340 AC144568.1-201ENST00000520139 137 ntBASIC3.32□□□□□ -1.88
HLA-DOAP06340 AC245166.1-201ENST00000521012 253 ntBASIC3.32□□□□□ -1.88
HLA-DOAP06340 MRPS36P4-201ENST00000534436 298 ntBASIC3.32□□□□□ -1.88
HLA-DOAP06340 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.32□□□□□ -1.88
HLA-DOAP06340 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.32□□□□□ -1.88
HLA-DOAP06340 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC3.32□□□□□ -1.88
HLA-DOAP06340 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
HLA-DOAP06340 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HLA-DOAP06340 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HLA-DOAP06340 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
HLA-DOAP06340 AC010615.1-201ENST00000594254 1764 ntBASIC3.31□□□□□ -1.88
HLA-DOAP06340 RNU1-35P-201ENST00000362782 153 ntBASIC3.31□□□□□ -1.88
HLA-DOAP06340 RNU1-73P-201ENST00000383971 164 ntBASIC3.31□□□□□ -1.88
HLA-DOAP06340 Y_RNA.471-201ENST00000384312 102 ntBASIC3.31□□□□□ -1.88
HLA-DOAP06340 MIR9-1-201ENST00000385198 89 ntBASIC3.31□□□□□ -1.88
HLA-DOAP06340 AC007098.1-201ENST00000420122 367 ntBASIC3.31□□□□□ -1.88
HLA-DOAP06340 AC098831.1-201ENST00000440661 216 ntBASIC3.31□□□□□ -1.88
HLA-DOAP06340 HMGB3P8-201ENST00000449709 577 ntBASIC3.31□□□□□ -1.88
HLA-DOAP06340 AC108938.1-201ENST00000451204 136 ntBASIC3.31□□□□□ -1.88
HLA-DOAP06340 AL109933.2-201ENST00000452651 260 ntBASIC3.31□□□□□ -1.88
HLA-DOAP06340 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.31□□□□□ -1.88
HLA-DOAP06340 SNORD127-201ENST00000458892 86 ntBASIC3.31□□□□□ -1.88
HLA-DOAP06340 RNU6-1132P-201ENST00000459214 107 ntBASIC3.31□□□□□ -1.88
HLA-DOAP06340 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC3.31□□□□□ -1.88
HLA-DOAP06340 RPL21P104-201ENST00000464143 478 ntBASIC3.31□□□□□ -1.88
HLA-DOAP06340 AC010469.2-201ENST00000496412 480 ntBASIC3.31□□□□□ -1.88
HLA-DOAP06340 AC093852.1-201ENST00000503587 266 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms