Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 RNU6-858P-201ENST00000362436 107 ntBASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 RNU6-845P-201ENST00000362578 103 ntBASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 Y_RNA.135-201ENST00000363439 95 ntBASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 RNU6-1329P-201ENST00000365664 107 ntBASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 RNU6-1083P-201ENST00000384022 107 ntBASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 SNORA32.2-201ENST00000384049 122 ntBASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 RNU6-831P-201ENST00000384548 107 ntBASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 SNORA48.3-201ENST00000391081 134 ntBASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 U3.26-201ENST00000391236 204 ntBASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 RPS29P13-201ENST00000402041 169 ntBASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 RN7SKP32-201ENST00000410167 303 ntBASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 AC074117.2-201ENST00000417130 397 ntBASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 AC098614.3-201ENST00000438957 440 ntBASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 AC012308.1-201ENST00000451232 178 ntBASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 AC008628.2-201ENST00000502605 298 ntBASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 MRPS36P2-201ENST00000512569 299 ntBASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 MIR514B-201ENST00000516774 80 ntBASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 AL138726.1-201ENST00000614873 333 ntBASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.15□□□□□ -2.07
CCDC28BQ9BUN5 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 RNU6-105P-201ENST00000363909 104 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 SNORA38-201ENST00000363946 132 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 SNORA3A-201ENST00000364113 130 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 SNORD116-20-201ENST00000384529 92 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 MTND4LP11-201ENST00000422184 280 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 AL591043.1-201ENST00000432461 424 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 RPS15AP10-201ENST00000432472 382 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 SNAP23P1-201ENST00000433229 246 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 AL645568.3-201ENST00000433683 316 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 MTATP6P23-201ENST00000440153 476 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 RPL32P28-201ENST00000443577 397 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 AC124916.1-201ENST00000444020 547 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 AL021397.1-201ENST00000451806 248 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 RPS3P1-201ENST00000456781 192 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 RNU6-1037P-201ENST00000459571 107 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 RPL7P43-201ENST00000478876 753 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 RNU4-49P-201ENST00000516080 140 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 RNU6-1332P-201ENST00000516666 104 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 RNA5SP364-201ENST00000516938 78 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 AC026371.1-201ENST00000551867 419 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 AL121579.1-201ENST00000555129 305 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 MIR4742-201ENST00000581069 85 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 MIR3672-201ENST00000584290 82 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 BNIP3P16-201ENST00000589779 534 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 AC009314.1-201ENST00000603871 304 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 AC096772.1-201ENST00000609146 564 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 MIR6817-201ENST00000615588 66 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 KPNA2P1-201ENST00000458289 1591 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 MTND5P30-201ENST00000452896 1731 ntBASIC2.14□□□□□ -2.07
CCDC28BQ9BUN5 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 CENPCP1-201ENST00000533085 2578 ntBASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 AC010329.5-201ENST00000623497 2174 ntBASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 AC062016.1-201ENST00000355719 319 ntBASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 RNU6-1252P-201ENST00000363054 104 ntBASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 SNORA72.1-201ENST00000363485 129 ntBASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 Y_RNA.301-201ENST00000364990 103 ntBASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 SNORD116-11-201ENST00000383882 92 ntBASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 SNORA67.4-201ENST00000384688 142 ntBASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 MIR196B-201ENST00000384852 84 ntBASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 RNA5SP390-201ENST00000410191 113 ntBASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 AL356379.1-201ENST00000414105 126 ntBASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 AC004383.1-201ENST00000438135 289 ntBASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 RPL23AP7-203ENST00000449021 469 ntBASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 AL031274.1-201ENST00000450334 232 ntBASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 RNA5SP148-201ENST00000516527 94 ntBASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 SNORA31.23-201ENST00000517219 133 ntBASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 MIR3942-201ENST00000585264 109 ntBASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 SNORD14A-201ENST00000606526 91 ntBASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 AC244517.12-201ENST00000623581 663 ntBASIC2.13□□□□□ -2.07
CCDC28BQ9BUN5 RNU6-562P-201ENST00000362731 107 ntBASIC2.12□□□□□ -2.07
CCDC28BQ9BUN5 RNU6-527P-201ENST00000363425 104 ntBASIC2.12□□□□□ -2.07
CCDC28BQ9BUN5 Y_RNA.303-201ENST00000364998 94 ntBASIC2.12□□□□□ -2.07
CCDC28BQ9BUN5 RNU6-827P-201ENST00000365553 106 ntBASIC2.12□□□□□ -2.07
CCDC28BQ9BUN5 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
CCDC28BQ9BUN5 RNU6-622P-201ENST00000384272 103 ntBASIC2.12□□□□□ -2.07
CCDC28BQ9BUN5 RNY3P14-201ENST00000384309 102 ntBASIC2.12□□□□□ -2.07
CCDC28BQ9BUN5 SNORD73A-201ENST00000386062 65 ntBASIC2.12□□□□□ -2.07
CCDC28BQ9BUN5 AL445529.1-201ENST00000398713 389 ntBASIC2.12□□□□□ -2.07
CCDC28BQ9BUN5 SUMO2P12-201ENST00000405924 140 ntBASIC2.12□□□□□ -2.07
CCDC28BQ9BUN5 SNORD23.1-201ENST00000408212 104 ntBASIC2.12□□□□□ -2.07
CCDC28BQ9BUN5 NCOR1P3-201ENST00000420479 303 ntBASIC2.12□□□□□ -2.07
CCDC28BQ9BUN5 AL353572.1-201ENST00000442490 417 ntBASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 166 ms