Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SCARNA3-201ENST00000517097 143 ntBASIC2.65□□□□□ -1.99
COL28A1Q2UY09 RNA5SP454-201ENST00000517231 127 ntBASIC2.65□□□□□ -1.99
COL28A1Q2UY09 AC104576.1-201ENST00000524225 88 ntBASIC2.65□□□□□ -1.99
COL28A1Q2UY09 AC004486.1-201ENST00000546846 233 ntBASIC2.65□□□□□ -1.99
COL28A1Q2UY09 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.65□□□□□ -1.99
COL28A1Q2UY09 AL121579.1-201ENST00000555129 305 ntBASIC2.65□□□□□ -1.99
COL28A1Q2UY09 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.65□□□□□ -1.99
COL28A1Q2UY09 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.65□□□□□ -1.99
COL28A1Q2UY09 AC026464.5-201ENST00000562497 722 ntBASIC2.65□□□□□ -1.99
COL28A1Q2UY09 CPDP1-201ENST00000579660 283 ntBASIC2.65□□□□□ -1.99
COL28A1Q2UY09 MIR4648-201ENST00000580107 72 ntBASIC2.65□□□□□ -1.99
COL28A1Q2UY09 AC016727.1-205ENST00000605437 569 ntBASIC2.65□□□□□ -1.99
COL28A1Q2UY09 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.65□□□□□ -1.99
COL28A1Q2UY09 AC104237.2-201ENST00000612456 443 ntBASIC2.65□□□□□ -1.99
COL28A1Q2UY09 AL159153.1-201ENST00000619688 317 ntBASIC2.65□□□□□ -1.99
COL28A1Q2UY09 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.65□□□□□ -1.99
COL28A1Q2UY09 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.64□□□□□ -1.99
COL28A1Q2UY09 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.64□□□□□ -1.99
COL28A1Q2UY09 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.64□□□□□ -1.99
COL28A1Q2UY09 Y_RNA.118-201ENST00000363300 101 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 RNU1-112P-201ENST00000364401 164 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 RNY3P14-201ENST00000384309 102 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 RNU6-95P-201ENST00000384697 107 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 MIR512-1-201ENST00000384913 84 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 MIR627-201ENST00000384979 97 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 MIR9-1-201ENST00000385198 89 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 U6atac.2-201ENST00000408644 118 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 RNA5SP425-201ENST00000410336 112 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 AL030996.1-201ENST00000411430 235 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 AP000275.1-201ENST00000411943 390 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 Z98742.2-201ENST00000431564 187 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.64□□□□□ -1.99
COL28A1Q2UY09 MTND1P17-201ENST00000448961 204 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 AMD1P1-201ENST00000457220 922 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 U8.21-201ENST00000459536 136 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 AC114801.2-201ENST00000503825 781 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.64□□□□□ -1.99
COL28A1Q2UY09 RNU6-56P-201ENST00000516986 93 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 COX6CP5-201ENST00000527162 228 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 AC105137.2-201ENST00000569073 466 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.64□□□□□ -1.99
COL28A1Q2UY09 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.64□□□□□ -1.99
COL28A1Q2UY09 AC103810.1-201ENST00000579873 453 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.64□□□□□ -1.99
COL28A1Q2UY09 MIR3670-2-201ENST00000582974 65 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 MIR3670-1-201ENST00000584160 65 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 MIR3670-3-201ENST00000584855 65 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 uc_338.5-201ENST00000611839 155 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 MIR3670-4-201ENST00000612260 65 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 AC007792.1-201ENST00000623023 402 ntBASIC2.64□□□□□ -1.99
COL28A1Q2UY09 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.64□□□□□ -1.99
COL28A1Q2UY09 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
COL28A1Q2UY09 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.63□□□□□ -1.99
COL28A1Q2UY09 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
COL28A1Q2UY09 RPL21P75-201ENST00000396599 483 ntBASIC2.63□□□□□ -1.99
COL28A1Q2UY09 RPL21P28-201ENST00000401418 483 ntBASIC2.63□□□□□ -1.99
COL28A1Q2UY09 AL138827.1-201ENST00000402666 306 ntBASIC2.63□□□□□ -1.99
COL28A1Q2UY09 AL133475.1-201ENST00000404414 305 ntBASIC2.63□□□□□ -1.99
COL28A1Q2UY09 NCOR1P3-201ENST00000420479 303 ntBASIC2.63□□□□□ -1.99
COL28A1Q2UY09 MTND4LP11-201ENST00000422184 280 ntBASIC2.63□□□□□ -1.99
COL28A1Q2UY09 HMGN2P3-201ENST00000433603 273 ntBASIC2.63□□□□□ -1.99
COL28A1Q2UY09 HMGN2P5-201ENST00000436882 273 ntBASIC2.63□□□□□ -1.99
COL28A1Q2UY09 MTND1P11-201ENST00000456661 876 ntBASIC2.63□□□□□ -1.99
COL28A1Q2UY09 PPP1R2P5-201ENST00000457256 603 ntBASIC2.63□□□□□ -1.99
COL28A1Q2UY09 AC080013.2-201ENST00000460866 323 ntBASIC2.63□□□□□ -1.99
COL28A1Q2UY09 AC112771.1-201ENST00000463581 102 ntBASIC2.63□□□□□ -1.99
COL28A1Q2UY09 RPL21P39-201ENST00000463605 483 ntBASIC2.63□□□□□ -1.99
COL28A1Q2UY09 AC130509.1-201ENST00000464158 433 ntBASIC2.63□□□□□ -1.99
COL28A1Q2UY09 AC087190.1-201ENST00000484462 480 ntBASIC2.63□□□□□ -1.99
COL28A1Q2UY09 AC093591.1-201ENST00000491435 481 ntBASIC2.63□□□□□ -1.99
COL28A1Q2UY09 RPL21P16-201ENST00000495531 483 ntBASIC2.63□□□□□ -1.99
COL28A1Q2UY09 UBE2V2P2-201ENST00000587677 504 ntBASIC2.63□□□□□ -1.99
COL28A1Q2UY09 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.63□□□□□ -1.99
COL28A1Q2UY09 AP001836.1-201ENST00000604675 523 ntBASIC2.63□□□□□ -1.99
COL28A1Q2UY09 AL355073.2-201ENST00000612106 557 ntBASIC2.63□□□□□ -1.99
COL28A1Q2UY09 AC097372.5-201ENST00000623665 376 ntBASIC2.63□□□□□ -1.99
COL28A1Q2UY09 Z75746.1-201ENST00000440243 2080 ntBASIC2.63□□□□□ -1.99
COL28A1Q2UY09 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.63□□□□□ -1.99
COL28A1Q2UY09 RNU1-35P-201ENST00000362782 153 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 VTRNA1-1-201ENST00000363120 99 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 RNU6-529P-201ENST00000363383 104 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 RNU6-1141P-201ENST00000364520 107 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 SNORD32A-201ENST00000364805 84 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 SET-203ENST00000372688 801 ntTSL 2 BASIC2.62□□□□□ -1.99
COL28A1Q2UY09 RNU1-57P-201ENST00000384491 166 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 RNU6-692P-201ENST00000384496 107 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 RNU6-325P-201ENST00000411132 105 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 RPL19P1-201ENST00000411635 428 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.62□□□□□ -1.99
COL28A1Q2UY09 AC009963.1-201ENST00000417265 157 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 PDCL2P1-201ENST00000419302 352 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 AL139396.1-201ENST00000421137 167 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.62□□□□□ -1.99
COL28A1Q2UY09 RPL23AP95-201ENST00000426806 265 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.62□□□□□ -1.99
COL28A1Q2UY09 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.62□□□□□ -1.99
COL28A1Q2UY09 AP000705.1-201ENST00000454567 350 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 RN7SL297P-201ENST00000483161 293 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 CKS1BP2-201ENST00000497342 240 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 SMURF2P1-201ENST00000514992 481 ntBASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms