Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.46□□□□□ -2.01
UPF3AQ9H1J1 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.46□□□□□ -2.01
UPF3AQ9H1J1 AL356292.1-201ENST00000283110 373 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 RNU6-1252P-201ENST00000363054 104 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 Y_RNA.184-201ENST00000363884 108 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 U8.8-201ENST00000365399 135 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 RNU6-166P-201ENST00000384371 107 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 RNU6-1179P-201ENST00000384667 107 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 SNORA40C-201ENST00000391285 128 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 AL078595.1-201ENST00000404458 226 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 RNU2-68P-201ENST00000410878 191 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 AC099548.1-201ENST00000421443 426 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 CR769767.1-201ENST00000436337 346 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 AC009296.1-201ENST00000443146 155 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 RNU6-329P-201ENST00000459618 107 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 RPS29P20-201ENST00000489592 171 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 SNORA14.1-201ENST00000516113 141 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 RNU6-1069P-201ENST00000516612 133 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 RNU6-143P-201ENST00000516942 93 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 RNA5SP291-201ENST00000517222 105 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 MIR4742-201ENST00000581069 85 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 AC091135.1-201ENST00000585943 307 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 AL049779.4-201ENST00000604500 156 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 RMST_4.1-201ENST00000616886 107 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 AC009831.4-201ENST00000620744 325 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 AC138627.2-201ENST00000624202 601 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 AC080100.1-201ENST00000624239 5356 ntBASIC2.46□□□□□ -2.02
UPF3AQ9H1J1 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 RNU6-254P-201ENST00000363377 107 ntBASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 Y_RNA.301-201ENST00000364990 103 ntBASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 RNU6-395P-201ENST00000365662 106 ntBASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 RNU6-1035P-201ENST00000384477 107 ntBASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 U8.13-201ENST00000390842 128 ntBASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 RNA5SP354-201ENST00000391247 136 ntBASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 AL356432.1-201ENST00000405809 419 ntBASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 IFNA20P-201ENST00000436840 528 ntBASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 AL583843.1-201ENST00000456070 346 ntBASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 RPL37P6-201ENST00000460682 294 ntBASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 AC011005.2-201ENST00000487324 359 ntBASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 RNU6-1088P-201ENST00000516850 104 ntBASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 SNORA31.19-201ENST00000517079 126 ntBASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 RAB11AP2-201ENST00000545905 639 ntBASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 HMGB1P14-201ENST00000557424 591 ntBASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 MIR5692C1-201ENST00000585309 91 ntBASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 U2.17-201ENST00000611454 95 ntBASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 AL031601.2-202ENST00000622650 282 ntBASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 AC022336.2-201ENST00000568966 2538 ntBASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
UPF3AQ9H1J1 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 Y_RNA.100-201ENST00000363141 102 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 Y_RNA.166-201ENST00000363730 102 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 RNU6-884P-201ENST00000363889 107 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 RNU6-266P-201ENST00000364225 107 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 SNORD14B-201ENST00000364533 90 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 Y_RNA.414-201ENST00000384011 101 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 Y_RNA.530-201ENST00000384587 101 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 RNU2-41P-201ENST00000410991 178 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 MTND3P8-201ENST00000412909 339 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 ARL5AP1-201ENST00000418991 388 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 RPL7P12-201ENST00000446719 750 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 AC233279.1-201ENST00000455300 423 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 AC010099.1-201ENST00000455434 375 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 AC073901.1-201ENST00000462471 408 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 AC046134.1-201ENST00000514454 666 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 RNU6-864P-201ENST00000516256 108 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 RNU6-572P-201ENST00000516724 80 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 RNU7-30P-201ENST00000516835 62 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 AC087241.2-201ENST00000535801 324 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 AL391261.3-201ENST00000557194 520 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 MIR3672-201ENST00000584290 82 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 AC005261.5-201ENST00000596280 355 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 AL117336.2-201ENST00000602435 335 ntBASIC2.44□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 130.8 ms