Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 AP000654.2-201ENST00000605633 586 ntBASIC0.08□□□□□ -2.4
HMGN4O00479 AL451064.1-201ENST00000607718 471 ntBASIC0.08□□□□□ -2.4
HMGN4O00479 AC017083.3-201ENST00000609955 700 ntBASIC0.08□□□□□ -2.4
HMGN4O00479 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC0.08□□□□□ -2.4
HMGN4O00479 MIR3529-201ENST00000637713 78 ntBASIC0.08□□□□□ -2.4
HMGN4O00479 MIR924-201ENST00000638017 53 ntBASIC0.08□□□□□ -2.4
HMGN4O00479 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.07□□□□□ -2.4
HMGN4O00479 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.07□□□□□ -2.4
HMGN4O00479 RNU6-349P-201ENST00000362402 107 ntBASIC0.07□□□□□ -2.4
HMGN4O00479 Y_RNA.40-201ENST00000362645 93 ntBASIC0.07□□□□□ -2.4
HMGN4O00479 RNU6-1019P-201ENST00000364424 107 ntBASIC0.07□□□□□ -2.4
HMGN4O00479 Y_RNA.238-201ENST00000364441 102 ntBASIC0.07□□□□□ -2.4
HMGN4O00479 SNORD115-48-201ENST00000364764 76 ntBASIC0.07□□□□□ -2.4
HMGN4O00479 RNU6-487P-201ENST00000365430 104 ntBASIC0.07□□□□□ -2.4
HMGN4O00479 SUGT1P1-201ENST00000379514 476 ntBASIC0.07□□□□□ -2.4
HMGN4O00479 RNU6-843P-201ENST00000384454 104 ntBASIC0.07□□□□□ -2.4
HMGN4O00479 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.07□□□□□ -2.4
HMGN4O00479 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC0.07□□□□□ -2.4
HMGN4O00479 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC0.07□□□□□ -2.4
HMGN4O00479 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC0.07□□□□□ -2.4
HMGN4O00479 AC104629.1-201ENST00000494226 508 ntBASIC0.07□□□□□ -2.4
HMGN4O00479 AC093809.1-201ENST00000509155 340 ntBASIC0.07□□□□□ -2.4
HMGN4O00479 RN7SKP258-201ENST00000517151 304 ntBASIC0.07□□□□□ -2.4
HMGN4O00479 AL442163.3-201ENST00000554110 156 ntBASIC0.07□□□□□ -2.4
HMGN4O00479 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.07□□□□□ -2.4
HMGN4O00479 AC078795.2-201ENST00000602835 1252 ntBASIC0.07□□□□□ -2.4
HMGN4O00479 DPPA3P3-201ENST00000603842 430 ntBASIC0.07□□□□□ -2.4
HMGN4O00479 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC0.07□□□□□ -2.4
HMGN4O00479 AC126177.8-201ENST00000618339 1015 ntBASIC0.07□□□□□ -2.4
HMGN4O00479 AC006213.5-201ENST00000619673 288 ntBASIC0.07□□□□□ -2.4
HMGN4O00479 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.07□□□□□ -2.4
HMGN4O00479 RNU6-1066P-201ENST00000363573 105 ntBASIC0.06□□□□□ -2.4
HMGN4O00479 RNU6-796P-201ENST00000391086 107 ntBASIC0.06□□□□□ -2.4
HMGN4O00479 RNA5SP299-201ENST00000391203 116 ntBASIC0.06□□□□□ -2.4
HMGN4O00479 AF228730.1-201ENST00000397972 663 ntBASIC0.06□□□□□ -2.4
HMGN4O00479 RNA5SP111-201ENST00000411386 101 ntBASIC0.06□□□□□ -2.4
HMGN4O00479 BX119904.4-201ENST00000424402 301 ntBASIC0.06□□□□□ -2.4
HMGN4O00479 COX7BP2-201ENST00000437976 242 ntBASIC0.06□□□□□ -2.4
HMGN4O00479 MTND1P30-201ENST00000441241 901 ntBASIC0.06□□□□□ -2.4
HMGN4O00479 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.06□□□□□ -2.4
HMGN4O00479 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC0.06□□□□□ -2.4
HMGN4O00479 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC0.06□□□□□ -2.4
HMGN4O00479 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC0.06□□□□□ -2.4
HMGN4O00479 RPL39P38-201ENST00000467018 153 ntBASIC0.06□□□□□ -2.4
HMGN4O00479 AC108740.1-201ENST00000498629 225 ntBASIC0.06□□□□□ -2.4
HMGN4O00479 AC105758.1-201ENST00000506038 399 ntBASIC0.06□□□□□ -2.4
HMGN4O00479 AC022493.2-201ENST00000506122 481 ntBASIC0.06□□□□□ -2.4
HMGN4O00479 RNU6-572P-201ENST00000516724 80 ntBASIC0.06□□□□□ -2.4
HMGN4O00479 AC009902.1-201ENST00000519351 183 ntBASIC0.06□□□□□ -2.4
HMGN4O00479 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC0.06□□□□□ -2.4
HMGN4O00479 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC0.06□□□□□ -2.4
HMGN4O00479 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC0.06□□□□□ -2.4
HMGN4O00479 BNIP3P30-201ENST00000601184 574 ntBASIC0.06□□□□□ -2.4
HMGN4O00479 AC092106.3-201ENST00000611308 722 ntBASIC0.06□□□□□ -2.4
HMGN4O00479 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC0.06□□□□□ -2.4
HMGN4O00479 AL138726.1-201ENST00000614873 333 ntBASIC0.06□□□□□ -2.4
HMGN4O00479 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.06□□□□□ -2.4
HMGN4O00479 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC0.06□□□□□ -2.4
HMGN4O00479 snoU2_19.1-201ENST00000362361 80 ntBASIC0.05□□□□□ -2.4
HMGN4O00479 RNU6-858P-201ENST00000362436 107 ntBASIC0.05□□□□□ -2.4
HMGN4O00479 Y_RNA.363-201ENST00000365529 113 ntBASIC0.05□□□□□ -2.4
HMGN4O00479 RNU6-432P-201ENST00000384196 109 ntBASIC0.05□□□□□ -2.4
HMGN4O00479 UBE2V1P10-201ENST00000414685 269 ntBASIC0.05□□□□□ -2.4
HMGN4O00479 RPS15AP10-201ENST00000432472 382 ntBASIC0.05□□□□□ -2.4
HMGN4O00479 TPTE2P1-204ENST00000435256 593 ntBASIC0.05□□□□□ -2.4
HMGN4O00479 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC0.05□□□□□ -2.4
HMGN4O00479 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC0.05□□□□□ -2.4
HMGN4O00479 MTND1P3-201ENST00000484956 952 ntBASIC0.05□□□□□ -2.4
HMGN4O00479 HMGB1P30-201ENST00000492455 606 ntBASIC0.05□□□□□ -2.4
HMGN4O00479 AC105313.1-201ENST00000509121 353 ntBASIC0.05□□□□□ -2.4
HMGN4O00479 SNORA68.3-201ENST00000515906 83 ntBASIC0.05□□□□□ -2.4
HMGN4O00479 AC087854.1-201ENST00000519706 414 ntBASIC0.05□□□□□ -2.4
HMGN4O00479 AC126365.2-201ENST00000580630 379 ntBASIC0.05□□□□□ -2.4
HMGN4O00479 AC090330.1-201ENST00000588646 764 ntBASIC0.05□□□□□ -2.4
HMGN4O00479 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC0.05□□□□□ -2.4
HMGN4O00479 KC877982.1-201ENST00000602313 470 ntBASIC0.05□□□□□ -2.4
HMGN4O00479 AC012557.2-201ENST00000605919 418 ntBASIC0.05□□□□□ -2.4
HMGN4O00479 RMST_10.1-201ENST00000616309 154 ntBASIC0.05□□□□□ -2.4
HMGN4O00479 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC0.05□□□□□ -2.4
HMGN4O00479 U3.9-201ENST00000363823 204 ntBASIC0.04□□□□□ -2.4
HMGN4O00479 SNORA80D-201ENST00000384488 135 ntBASIC0.04□□□□□ -2.4
HMGN4O00479 RAP1BP3-201ENST00000407180 549 ntBASIC0.04□□□□□ -2.4
HMGN4O00479 RNU2-23P-201ENST00000410545 195 ntBASIC0.04□□□□□ -2.4
HMGN4O00479 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC0.04□□□□□ -2.4
HMGN4O00479 AC245047.7-201ENST00000440265 293 ntBASIC0.04□□□□□ -2.4
HMGN4O00479 MTCYBP1-201ENST00000454315 1119 ntBASIC0.04□□□□□ -2.4
HMGN4O00479 AC233266.1-201ENST00000454518 96 ntBASIC0.04□□□□□ -2.4
HMGN4O00479 AC092989.1-201ENST00000481235 277 ntBASIC0.04□□□□□ -2.4
HMGN4O00479 AC009646.1-201ENST00000510455 318 ntBASIC0.04□□□□□ -2.4
HMGN4O00479 AC010587.2-201ENST00000511727 448 ntBASIC0.04□□□□□ -2.4
HMGN4O00479 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.04□□□□□ -2.4
HMGN4O00479 MIR3976-201ENST00000606807 139 ntBASIC0.04□□□□□ -2.4
HMGN4O00479 AC242852.1-201ENST00000612151 96 ntBASIC0.04□□□□□ -2.4
HMGN4O00479 AC244015.1-201ENST00000622301 99 ntBASIC0.04□□□□□ -2.4
HMGN4O00479 AC099654.9-201ENST00000637055 678 ntBASIC0.04□□□□□ -2.4
HMGN4O00479 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC0.03□□□□□ -2.4
HMGN4O00479 MIRLET7D-201ENST00000362263 87 ntBASIC0.03□□□□□ -2.4
HMGN4O00479 SNORD114-23-201ENST00000363536 72 ntBASIC0.03□□□□□ -2.4
HMGN4O00479 SNORD56.4-201ENST00000363883 71 ntBASIC0.03□□□□□ -2.4
HMGN4O00479 RNU6-1327P-201ENST00000365302 105 ntBASIC0.03□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 136.4 ms