Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MIR504-201ENST00000385065 83 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 RNU6-192P-201ENST00000391253 100 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 CBX3P9-201ENST00000402326 552 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 MRPL42P2-201ENST00000403169 426 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 RNU2-23P-201ENST00000410545 195 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 USP9YP18-201ENST00000425912 695 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 MTCO2P11-201ENST00000431069 680 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 USP9YP15-201ENST00000442391 422 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 RPL23AP7-203ENST00000449021 469 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 AL021397.1-201ENST00000451806 248 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 OFD1P4Y-201ENST00000455273 1179 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 snoU13.26-201ENST00000459452 105 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 AC025033.1-201ENST00000463883 194 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 RNU1-41P-201ENST00000516161 162 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 RNU1-48P-201ENST00000516400 162 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 SCARNA24.1-201ENST00000516465 137 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 AC090572.1-201ENST00000519251 160 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 AP005639.2-201ENST00000527592 928 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 AP003072.2-201ENST00000527756 676 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 AC016957.1-201ENST00000534895 309 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 AC025678.1-201ENST00000567861 338 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 MIR1273D-201ENST00000577266 86 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 BNIP3P25-201ENST00000596023 559 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 AC068790.6-201ENST00000602558 258 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 DEFB131E-202ENST00000602581 683 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 AL078605.1-201ENST00000603529 500 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 AC080078.2-201ENST00000603766 501 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 AL391646.1-201ENST00000603860 190 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 AL158032.1-201ENST00000605401 106 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 AC103810.6-201ENST00000606708 136 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 SNORD14B-201ENST00000364533 90 ntBASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 EIF4EP2-201ENST00000422816 654 ntBASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 MTCO2P19-201ENST00000427513 598 ntBASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 AL139415.2-201ENST00000431968 163 ntBASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 snoU13.14-201ENST00000459372 104 ntBASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 AL121594.1-201ENST00000475906 575 ntBASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 RPL9P6-201ENST00000492764 598 ntBASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 AC112206.3-201ENST00000514578 389 ntBASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 RN7SKP298-201ENST00000515950 94 ntBASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 IGKV3-31-201ENST00000523109 329 ntBASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 AP003392.2-201ENST00000527269 208 ntBASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 CYCSP27-201ENST00000527643 293 ntBASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 AC022616.8-201ENST00000533569 253 ntBASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 SNRPGP18-201ENST00000553000 214 ntBASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 AC137800.2-201ENST00000574375 120 ntBASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 MIR5007-201ENST00000583098 95 ntBASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 AC092954.2-201ENST00000609103 430 ntBASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 AL359314.1-201ENST00000616913 261 ntBASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 MIR6873-201ENST00000622788 63 ntBASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 AC002543.1-201ENST00000299783 1954 ntBASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
ZNF540Q8NDQ6 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2□□□□□ -2.09
ZNF540Q8NDQ6 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2□□□□□ -2.09
ZNF540Q8NDQ6 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
ZNF540Q8NDQ6 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2□□□□□ -2.09
ZNF540Q8NDQ6 RNA5SP289-201ENST00000362332 137 ntBASIC2□□□□□ -2.09
ZNF540Q8NDQ6 RNU6-1103P-201ENST00000384150 107 ntBASIC2□□□□□ -2.09
ZNF540Q8NDQ6 SNORD116-20-201ENST00000384529 92 ntBASIC2□□□□□ -2.09
ZNF540Q8NDQ6 RNA5SP338-201ENST00000410495 85 ntBASIC2□□□□□ -2.09
ZNF540Q8NDQ6 SRIP3-201ENST00000413200 219 ntBASIC2□□□□□ -2.09
ZNF540Q8NDQ6 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2□□□□□ -2.09
ZNF540Q8NDQ6 AL353193.1-201ENST00000421444 268 ntBASIC2□□□□□ -2.09
ZNF540Q8NDQ6 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2□□□□□ -2.09
ZNF540Q8NDQ6 MTND1P4-201ENST00000435196 415 ntBASIC2□□□□□ -2.09
ZNF540Q8NDQ6 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2□□□□□ -2.09
ZNF540Q8NDQ6 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2□□□□□ -2.09
ZNF540Q8NDQ6 AC073614.1-201ENST00000438690 650 ntBASIC2□□□□□ -2.09
ZNF540Q8NDQ6 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2□□□□□ -2.09
ZNF540Q8NDQ6 AC010095.1-201ENST00000443543 144 ntBASIC2□□□□□ -2.09
ZNF540Q8NDQ6 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC2□□□□□ -2.09
ZNF540Q8NDQ6 AC132479.1-201ENST00000449160 144 ntBASIC2□□□□□ -2.09
ZNF540Q8NDQ6 C1DP4-201ENST00000455429 424 ntBASIC2□□□□□ -2.09
ZNF540Q8NDQ6 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC2□□□□□ -2.09
ZNF540Q8NDQ6 RNU2-44P-201ENST00000516795 194 ntBASIC2□□□□□ -2.09
ZNF540Q8NDQ6 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2□□□□□ -2.09
ZNF540Q8NDQ6 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC2□□□□□ -2.09
ZNF540Q8NDQ6 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms