Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AL592045.1-201ENST00000429867 352 ntBASIC-0.33□□□□□ -2.46
LINC00643Q86TS7 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC-0.33□□□□□ -2.46
LINC00643Q86TS7 NFU1P2-201ENST00000448700 469 ntBASIC-0.33□□□□□ -2.46
LINC00643Q86TS7 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC-0.33□□□□□ -2.46
LINC00643Q86TS7 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC-0.33□□□□□ -2.46
LINC00643Q86TS7 U7.7-201ENST00000459276 60 ntBASIC-0.33□□□□□ -2.46
LINC00643Q86TS7 MTND1P22-201ENST00000510572 951 ntBASIC-0.33□□□□□ -2.46
LINC00643Q86TS7 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC-0.33□□□□□ -2.46
LINC00643Q86TS7 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC-0.33□□□□□ -2.46
LINC00643Q86TS7 MTATP6P3-201ENST00000581686 676 ntBASIC-0.33□□□□□ -2.46
LINC00643Q86TS7 FAM106DP-201ENST00000586416 501 ntBASIC-0.33□□□□□ -2.46
LINC00643Q86TS7 MIR3976-201ENST00000606807 139 ntBASIC-0.33□□□□□ -2.46
LINC00643Q86TS7 AC083806.3-201ENST00000614016 455 ntBASIC-0.33□□□□□ -2.46
LINC00643Q86TS7 AC073349.3-201ENST00000617616 186 ntBASIC-0.33□□□□□ -2.46
LINC00643Q86TS7 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC-0.33□□□□□ -2.46
LINC00643Q86TS7 MIR96-201ENST00000362288 78 ntBASIC-0.34□□□□□ -2.46
LINC00643Q86TS7 RNU6-1167P-201ENST00000363227 94 ntBASIC-0.34□□□□□ -2.46
LINC00643Q86TS7 RNA5SP496-201ENST00000391240 109 ntBASIC-0.34□□□□□ -2.46
LINC00643Q86TS7 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC-0.34□□□□□ -2.46
LINC00643Q86TS7 GPM6BP2-201ENST00000432046 144 ntBASIC-0.34□□□□□ -2.46
LINC00643Q86TS7 GPM6BP1-201ENST00000446387 144 ntBASIC-0.34□□□□□ -2.46
LINC00643Q86TS7 MTCYBP11-201ENST00000447254 1109 ntBASIC-0.34□□□□□ -2.46
LINC00643Q86TS7 TPRKBP1-201ENST00000456243 481 ntBASIC-0.34□□□□□ -2.46
LINC00643Q86TS7 RNU6-927P-201ENST00000516199 100 ntBASIC-0.34□□□□□ -2.46
LINC00643Q86TS7 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC-0.34□□□□□ -2.46
LINC00643Q86TS7 AC044913.1-201ENST00000557200 430 ntBASIC-0.34□□□□□ -2.46
LINC00643Q86TS7 MIR4709-201ENST00000577272 72 ntBASIC-0.34□□□□□ -2.46
LINC00643Q86TS7 BNIP3P8-201ENST00000597863 560 ntBASIC-0.34□□□□□ -2.46
LINC00643Q86TS7 AC098483.2-201ENST00000603158 454 ntBASIC-0.34□□□□□ -2.46
LINC00643Q86TS7 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC-0.34□□□□□ -2.46
LINC00643Q86TS7 7SK.10-201ENST00000621414 298 ntBASIC-0.34□□□□□ -2.46
LINC00643Q86TS7 U6.99-201ENST00000637524 83 ntBASIC-0.34□□□□□ -2.46
LINC00643Q86TS7 MIR371B-201ENST00000638082 66 ntBASIC-0.34□□□□□ -2.46
LINC00643Q86TS7 AL589743.1-201ENST00000551932 2712 ntBASIC-0.34□□□□□ -2.46
LINC00643Q86TS7 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC-0.34□□□□□ -2.46
LINC00643Q86TS7 SNORA32.1-201ENST00000364514 115 ntBASIC-0.35□□□□□ -2.47
LINC00643Q86TS7 AL357139.1-201ENST00000407792 426 ntBASIC-0.35□□□□□ -2.47
LINC00643Q86TS7 RNU6ATAC33P-201ENST00000408647 126 ntBASIC-0.35□□□□□ -2.47
LINC00643Q86TS7 RNA5SP511-201ENST00000410487 115 ntBASIC-0.35□□□□□ -2.47
LINC00643Q86TS7 RNU6-77P-201ENST00000410554 91 ntBASIC-0.35□□□□□ -2.47
LINC00643Q86TS7 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC-0.35□□□□□ -2.47
LINC00643Q86TS7 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC-0.35□□□□□ -2.47
LINC00643Q86TS7 AC104806.1-201ENST00000508720 308 ntBASIC-0.35□□□□□ -2.47
LINC00643Q86TS7 AC024589.1-201ENST00000512207 263 ntBASIC-0.35□□□□□ -2.47
LINC00643Q86TS7 AC011406.1-201ENST00000512440 370 ntBASIC-0.35□□□□□ -2.47
LINC00643Q86TS7 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC-0.35□□□□□ -2.47
LINC00643Q86TS7 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC-0.35□□□□□ -2.47
LINC00643Q86TS7 AL357312.1-201ENST00000603879 298 ntBASIC-0.35□□□□□ -2.47
LINC00643Q86TS7 AC011451.2-201ENST00000604303 598 ntBASIC-0.35□□□□□ -2.47
LINC00643Q86TS7 AC097065.2-201ENST00000608159 533 ntBASIC-0.35□□□□□ -2.47
LINC00643Q86TS7 MIR6718-201ENST00000616153 80 ntBASIC-0.35□□□□□ -2.47
LINC00643Q86TS7 AC004009.2-201ENST00000623016 728 ntBASIC-0.35□□□□□ -2.47
LINC00643Q86TS7 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC-0.35□□□□□ -2.47
LINC00643Q86TS7 AC107982.1-201ENST00000507171 1300 ntBASIC-0.36□□□□□ -2.47
LINC00643Q86TS7 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC-0.36□□□□□ -2.47
LINC00643Q86TS7 Y_RNA.332-201ENST00000365271 113 ntBASIC-0.36□□□□□ -2.47
LINC00643Q86TS7 RNU6-1067P-201ENST00000384752 107 ntBASIC-0.36□□□□□ -2.47
LINC00643Q86TS7 CBX3P9-201ENST00000402326 552 ntBASIC-0.36□□□□□ -2.47
LINC00643Q86TS7 AL355796.1-201ENST00000406706 323 ntBASIC-0.36□□□□□ -2.47
LINC00643Q86TS7 RNA5SP193-201ENST00000410353 107 ntBASIC-0.36□□□□□ -2.47
LINC00643Q86TS7 RNU2-70P-201ENST00000410718 179 ntBASIC-0.36□□□□□ -2.47
LINC00643Q86TS7 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC-0.36□□□□□ -2.47
LINC00643Q86TS7 ELOCP9-201ENST00000418624 239 ntBASIC-0.36□□□□□ -2.47
LINC00643Q86TS7 MTND2P5-201ENST00000432656 1006 ntBASIC-0.36□□□□□ -2.47
LINC00643Q86TS7 TAF9P1-201ENST00000445421 515 ntBASIC-0.36□□□□□ -2.47
LINC00643Q86TS7 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC-0.36□□□□□ -2.47
LINC00643Q86TS7 FABP5P15-201ENST00000453566 214 ntBASIC-0.36□□□□□ -2.47
LINC00643Q86TS7 TAF9P2-201ENST00000454958 515 ntBASIC-0.36□□□□□ -2.47
LINC00643Q86TS7 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC-0.36□□□□□ -2.47
LINC00643Q86TS7 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC-0.36□□□□□ -2.47
LINC00643Q86TS7 AC011979.2-201ENST00000527568 352 ntBASIC-0.36□□□□□ -2.47
LINC00643Q86TS7 AC007834.2-201ENST00000536310 343 ntBASIC-0.36□□□□□ -2.47
LINC00643Q86TS7 AL161798.1-201ENST00000604630 131 ntBASIC-0.36□□□□□ -2.47
LINC00643Q86TS7 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC-0.36□□□□□ -2.47
LINC00643Q86TS7 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC-0.37□□□□□ -2.47
LINC00643Q86TS7 RNU4-67P-201ENST00000364569 141 ntBASIC-0.37□□□□□ -2.47
LINC00643Q86TS7 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC-0.37□□□□□ -2.47
LINC00643Q86TS7 MTCO3P29-201ENST00000432119 779 ntBASIC-0.37□□□□□ -2.47
LINC00643Q86TS7 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC-0.37□□□□□ -2.47
LINC00643Q86TS7 MTND5P2-201ENST00000442927 1142 ntBASIC-0.37□□□□□ -2.47
LINC00643Q86TS7 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC-0.37□□□□□ -2.47
LINC00643Q86TS7 AL049830.1-201ENST00000468034 425 ntBASIC-0.37□□□□□ -2.47
LINC00643Q86TS7 RN7SL429P-201ENST00000479090 223 ntBASIC-0.37□□□□□ -2.47
LINC00643Q86TS7 RN7SL489P-201ENST00000486185 223 ntBASIC-0.37□□□□□ -2.47
LINC00643Q86TS7 RN7SL327P-201ENST00000488659 223 ntBASIC-0.37□□□□□ -2.47
LINC00643Q86TS7 NAF1-205ENST00000509434 385 ntTSL 3 BASIC-0.37□□□□□ -2.47
LINC00643Q86TS7 LRRC34P2-201ENST00000514850 553 ntBASIC-0.37□□□□□ -2.47
LINC00643Q86TS7 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC-0.37□□□□□ -2.47
LINC00643Q86TS7 AC116165.2-201ENST00000616705 206 ntBASIC-0.37□□□□□ -2.47
LINC00643Q86TS7 RN7SL853P-201ENST00000617250 223 ntBASIC-0.37□□□□□ -2.47
LINC00643Q86TS7 AL079343.1-201ENST00000572358 1771 ntBASIC-0.37□□□□□ -2.47
LINC00643Q86TS7 RNU6-288P-201ENST00000363690 104 ntBASIC-0.38□□□□□ -2.47
LINC00643Q86TS7 RNU6-1210P-201ENST00000363775 107 ntBASIC-0.38□□□□□ -2.47
LINC00643Q86TS7 RNU6-898P-201ENST00000365627 104 ntBASIC-0.38□□□□□ -2.47
LINC00643Q86TS7 MIR525-201ENST00000384978 85 ntBASIC-0.38□□□□□ -2.47
LINC00643Q86TS7 RNU6-700P-201ENST00000391043 107 ntBASIC-0.38□□□□□ -2.47
LINC00643Q86TS7 MIR936-201ENST00000401264 98 ntBASIC-0.38□□□□□ -2.47
LINC00643Q86TS7 Y_RNA.597-201ENST00000410463 100 ntBASIC-0.38□□□□□ -2.47
LINC00643Q86TS7 AC069257.2-201ENST00000441819 155 ntBASIC-0.38□□□□□ -2.47
LINC00643Q86TS7 RNFT1P2-201ENST00000443064 757 ntBASIC-0.38□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms