| MUC1 | P15941 | ATM-230 | ENST00000640388 | 578 nt | TSL 5 BASIC | 1.66 | □□□□□ -2.14 | | |
| MUC1 | P15941 | PYGO1-201 | ENST00000302000 | 8488 nt | TSL 1 (best) BASIC | 1.65 | □□□□□ -2.14 | | |
| MUC1 | P15941 | EDDM3A-201 | ENST00000326842 | 927 nt | APPRIS P1 TSL 1 (best) BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | SNORA16B-201 | ENST00000364674 | 135 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | RNU6-715P-201 | ENST00000365204 | 103 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | GSTA3-202 | ENST00000370968 | 775 nt | TSL 1 (best) BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | Y_RNA.409-201 | ENST00000383990 | 98 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | MIR10A-201 | ENST00000385043 | 110 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AL133475.1-201 | ENST00000404414 | 305 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | RNU2-16P-201 | ENST00000410712 | 136 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | RNU4-55P-201 | ENST00000410731 | 137 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | SNORD56-201 | ENST00000413522 | 71 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | PGBD4P6-201 | ENST00000421501 | 610 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | MTCYBP8-201 | ENST00000422855 | 651 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | PTGES3P4-201 | ENST00000426243 | 356 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AL669831.1-202 | ENST00000428504 | 417 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AL627311.1-201 | ENST00000431514 | 115 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AL136369.1-201 | ENST00000437825 | 244 nt | TSL 5 BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | GTF2IP13-201 | ENST00000438487 | 386 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | MTND1P18-201 | ENST00000448191 | 573 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | NDUFB1P2-201 | ENST00000449477 | 176 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AP001324.2-201 | ENST00000461163 | 319 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AC011005.2-201 | ENST00000487324 | 359 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AC079382.1-201 | ENST00000493346 | 557 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AC093831.1-201 | ENST00000509166 | 434 nt | TSL 3 BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AC010493.1-201 | ENST00000513479 | 292 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | RNU6-1178P-201 | ENST00000516674 | 107 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | RN7SKP219-201 | ENST00000516825 | 296 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AC023866.1-201 | ENST00000518064 | 579 nt | TSL 4 BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AC022039.1-201 | ENST00000527110 | 488 nt | TSL 2 BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AC044798.1-201 | ENST00000565146 | 418 nt | TSL 5 BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AC005154.1-222 | ENST00000579024 | 341 nt | TSL 5 BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | LINC01900-203 | ENST00000585185 | 393 nt | TSL 3 BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | BX546450.2-201 | ENST00000602419 | 435 nt | TSL 5 BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AC008121.1-201 | ENST00000603244 | 268 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AC087045.1-201 | ENST00000605856 | 382 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AC008945.2-201 | ENST00000606056 | 604 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AC079610.3-201 | ENST00000606960 | 147 nt | TSL 3 BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AC104073.3-201 | ENST00000610942 | 955 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | U6.42-201 | ENST00000618440 | 107 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AL161782.1-201 | ENST00000622930 | 586 nt | TSL 3 BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AC244517.12-201 | ENST00000623581 | 663 nt | BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | DPY19L2P1-203 | ENST00000458672 | 3347 nt | TSL 1 (best) BASIC | 1.65 | □□□□□ -2.15 | | |
| MUC1 | P15941 | Y_RNA.41-201 | ENST00000362646 | 102 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | RNU6-942P-201 | ENST00000363002 | 107 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | RNU6-1303P-201 | ENST00000364841 | 107 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | RNU6-72P-201 | ENST00000384285 | 79 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | RNU6-45P-201 | ENST00000384471 | 107 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | RNU6-1158P-201 | ENST00000391167 | 107 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | RNU2-3P-201 | ENST00000410144 | 191 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | RNU4-26P-201 | ENST00000410270 | 107 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | RNU2-2P-201 | ENST00000410396 | 191 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | CYCSP33-201 | ENST00000414485 | 327 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AL353621.1-201 | ENST00000418219 | 243 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | HMGN2P19-201 | ENST00000425149 | 265 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AL589986.2-201 | ENST00000429352 | 397 nt | TSL 2 BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | LINC01626-201 | ENST00000431997 | 452 nt | TSL 3 BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | DNAJC19P4-201 | ENST00000440115 | 345 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AL365258.1-201 | ENST00000440885 | 247 nt | TSL 3 BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | CALM1P1-201 | ENST00000442082 | 433 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | IKZF2-209 | ENST00000442445 | 551 nt | TSL 5 BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AL356010.1-201 | ENST00000456364 | 102 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | TSPY5P-202 | ENST00000456541 | 142 nt | TSL 3 BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | RN7SL429P-201 | ENST00000479090 | 223 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | RN7SL489P-201 | ENST00000486185 | 223 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | RN7SL327P-201 | ENST00000488659 | 223 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AC079943.1-201 | ENST00000491909 | 466 nt | TSL 3 BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | LINC02501-201 | ENST00000510420 | 426 nt | TSL 2 BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AC008869.1-201 | ENST00000510938 | 442 nt | TSL 2 BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AL358937.1-201 | ENST00000524512 | 336 nt | TSL 2 BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AP002884.4-201 | ENST00000527589 | 594 nt | TSL 3 BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AC133480.1-201 | ENST00000547563 | 381 nt | TSL 3 BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | MIR5089-201 | ENST00000580047 | 84 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | MIR5692A1-201 | ENST00000580523 | 69 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AL109918.3-201 | ENST00000603072 | 338 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AC005696.2-201 | ENST00000610120 | 626 nt | TSL 3 BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | U2.15-201 | ENST00000611544 | 191 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | U2.16-201 | ENST00000613119 | 191 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | U2.12-201 | ENST00000613778 | 191 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | U2.20-201 | ENST00000613956 | 192 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | U2.9-201 | ENST00000615427 | 191 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | U2.11-201 | ENST00000616345 | 191 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | U2.2-201 | ENST00000616535 | 191 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | RN7SL853P-201 | ENST00000617250 | 223 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | U2.3-201 | ENST00000617785 | 191 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | U2.19-201 | ENST00000618602 | 191 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | RNU2-1-201 | ENST00000618664 | 191 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | U2.6-201 | ENST00000619225 | 191 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AL158209.2-201 | ENST00000619266 | 216 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | U2.5-201 | ENST00000619465 | 191 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | U2.10-201 | ENST00000620268 | 191 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AC068792.1-201 | ENST00000621354 | 417 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | SLC9C2-201 | ENST00000367714 | 4428 nt | APPRIS P1 TSL 1 (best) BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | KTN1-207 | ENST00000438792 | 4449 nt | APPRIS ALT2 TSL 5 BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | AC080128.1-201 | ENST00000474389 | 1917 nt | BASIC | 1.64 | □□□□□ -2.15 | | |
| MUC1 | P15941 | MBNL3-212 | ENST00000538204 | 11294 nt | TSL 1 (best) BASIC | 1.63 | □□□□□ -2.15 | | |
| MUC1 | P15941 | LINC00305-201 | ENST00000323355 | 873 nt | TSL 1 (best) BASIC | 1.63 | □□□□□ -2.15 | | |
| MUC1 | P15941 | SNORD114-1-201 | ENST00000362705 | 72 nt | BASIC | 1.63 | □□□□□ -2.15 | | |
| MUC1 | P15941 | OR51A4-201 | ENST00000380373 | 1002 nt | APPRIS P1 BASIC | 1.63 | □□□□□ -2.15 | | |
| MUC1 | P15941 | RNU6-1083P-201 | ENST00000384022 | 107 nt | BASIC | 1.63 | □□□□□ -2.15 | | |