Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC3.43□□□□□ -1.86
CCDC140Q96MF4 RPL21P126-201ENST00000470049 478 ntBASIC3.43□□□□□ -1.86
CCDC140Q96MF4 RPS23P5-201ENST00000495419 428 ntBASIC3.43□□□□□ -1.86
CCDC140Q96MF4 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC140Q96MF4 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC140Q96MF4 RNU6-138P-201ENST00000515952 107 ntBASIC3.43□□□□□ -1.86
CCDC140Q96MF4 AC079598.5-201ENST00000547460 117 ntBASIC3.43□□□□□ -1.86
CCDC140Q96MF4 EIF4A1P12-201ENST00000551910 141 ntBASIC3.43□□□□□ -1.86
CCDC140Q96MF4 MIR4765-201ENST00000585007 77 ntBASIC3.43□□□□□ -1.86
CCDC140Q96MF4 BX284668.6-201ENST00000606899 438 ntBASIC3.43□□□□□ -1.86
CCDC140Q96MF4 AC091979.2-201ENST00000607514 214 ntBASIC3.43□□□□□ -1.86
CCDC140Q96MF4 MIR6810-201ENST00000622701 70 ntBASIC3.43□□□□□ -1.86
CCDC140Q96MF4 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.43□□□□□ -1.86
CCDC140Q96MF4 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC3.43□□□□□ -1.86
CCDC140Q96MF4 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.43□□□□□ -1.86
CCDC140Q96MF4 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC140Q96MF4 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC140Q96MF4 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC140Q96MF4 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC140Q96MF4 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.43□□□□□ -1.86
CCDC140Q96MF4 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
CCDC140Q96MF4 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC140Q96MF4 AL353746.1-201ENST00000566293 6881 ntBASIC3.42□□□□□ -1.86
CCDC140Q96MF4 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC140Q96MF4 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.42□□□□□ -1.86
CCDC140Q96MF4 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC140Q96MF4 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC140Q96MF4 AC010300.1-201ENST00000600671 5134 ntBASIC3.42□□□□□ -1.86
CCDC140Q96MF4 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC3.42□□□□□ -1.86
CCDC140Q96MF4 U3.9-201ENST00000363823 204 ntBASIC3.42□□□□□ -1.86
CCDC140Q96MF4 Y_RNA.331-201ENST00000365267 102 ntBASIC3.42□□□□□ -1.86
CCDC140Q96MF4 Y_RNA.570-201ENST00000384750 101 ntBASIC3.42□□□□□ -1.86
CCDC140Q96MF4 RNU2-14P-201ENST00000411053 191 ntBASIC3.42□□□□□ -1.86
CCDC140Q96MF4 AC017079.2-201ENST00000416102 485 ntBASIC3.42□□□□□ -1.86
CCDC140Q96MF4 AC092017.2-201ENST00000427600 362 ntBASIC3.42□□□□□ -1.86
CCDC140Q96MF4 DNAJC19P7-201ENST00000428811 344 ntBASIC3.42□□□□□ -1.86
CCDC140Q96MF4 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC3.42□□□□□ -1.86
CCDC140Q96MF4 AC007395.1-201ENST00000451333 677 ntBASIC3.42□□□□□ -1.86
CCDC140Q96MF4 UQCRHP4-201ENST00000471686 272 ntBASIC3.42□□□□□ -1.86
CCDC140Q96MF4 RN7SL459P-201ENST00000481078 302 ntBASIC3.42□□□□□ -1.86
CCDC140Q96MF4 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC3.42□□□□□ -1.86
CCDC140Q96MF4 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC140Q96MF4 RNU6-107P-201ENST00000516643 102 ntBASIC3.42□□□□□ -1.86
CCDC140Q96MF4 SNORD59.2-201ENST00000516873 68 ntBASIC3.42□□□□□ -1.86
CCDC140Q96MF4 RNU2-31P-201ENST00000516954 155 ntBASIC3.42□□□□□ -1.86
CCDC140Q96MF4 CYCSP23-201ENST00000519781 313 ntBASIC3.42□□□□□ -1.86
CCDC140Q96MF4 AC233702.2-202ENST00000562547 291 ntBASIC3.42□□□□□ -1.86
CCDC140Q96MF4 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC140Q96MF4 MIR4423-201ENST00000580922 80 ntBASIC3.42□□□□□ -1.86
CCDC140Q96MF4 AL356575.1-201ENST00000603008 283 ntBASIC3.42□□□□□ -1.86
CCDC140Q96MF4 AP000346.3-201ENST00000622821 210 ntBASIC3.42□□□□□ -1.86
CCDC140Q96MF4 AC110079.1-202ENST00000635213 138 ntBASIC3.42□□□□□ -1.86
CCDC140Q96MF4 IGHVIII-44-202ENST00000636235 289 ntBASIC3.42□□□□□ -1.86
CCDC140Q96MF4 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC140Q96MF4 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC3.42□□□□□ -1.86
CCDC140Q96MF4 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC3.42□□□□□ -1.86
CCDC140Q96MF4 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
CCDC140Q96MF4 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
CCDC140Q96MF4 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC140Q96MF4 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC140Q96MF4 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC140Q96MF4 AC006971.1-201ENST00000407916 4486 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC140Q96MF4 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC140Q96MF4 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC140Q96MF4 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC140Q96MF4 RNU1-32P-201ENST00000363937 159 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 CD24P4-201ENST00000382840 243 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 SNORA18.2-201ENST00000383865 132 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 HDGFP1-201ENST00000405943 252 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 RNA5SP201-201ENST00000410316 124 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 AL390729.2-201ENST00000416137 156 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 AC004386.2-201ENST00000441858 148 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 IFNA11P-201ENST00000446352 526 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 RPS3P1-201ENST00000456781 192 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 AC093663.1-201ENST00000497190 394 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 RAC1P5-201ENST00000512182 576 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 MRPS36P2-201ENST00000512569 299 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 AC074133.1-201ENST00000515696 183 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 AC100770.1-201ENST00000532310 322 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 MIR4643-201ENST00000577473 78 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC140Q96MF4 AL109918.3-201ENST00000603072 338 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 AC079587.1-201ENST00000603846 277 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 AC037487.3-201ENST00000606668 112 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 MIR378J-201ENST00000611988 109 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 AC004467.1-201ENST00000615678 330 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 AL138721.1-201ENST00000616756 179 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC3.41□□□□□ -1.86
CCDC140Q96MF4 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC140Q96MF4 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
CCDC140Q96MF4 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC140Q96MF4 MFSD8-242ENST00000641690 4199 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 AL359854.1-201ENST00000614203 1594 ntBASIC3.41□□□□□ -1.86
CCDC140Q96MF4 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC3.41□□□□□ -1.86
CCDC140Q96MF4 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
CCDC140Q96MF4 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.41□□□□□ -1.86
CCDC140Q96MF4 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
CCDC140Q96MF4 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
CCDC140Q96MF4 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 116.2 ms