Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 snoU2_19.1-201ENST00000362361 80 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 SNORD115-3-201ENST00000363100 82 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 SNORD114-6-201ENST00000364393 72 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 RNU6-360P-201ENST00000390944 104 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 RPL21P90-201ENST00000415692 466 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC0.74□□□□□ -2.29
CHD3Q12873 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC0.74□□□□□ -2.29
CHD3Q12873 EEF1E1P1-201ENST00000446998 430 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC0.74□□□□□ -2.29
CHD3Q12873 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC0.74□□□□□ -2.29
CHD3Q12873 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC0.74□□□□□ -2.29
CHD3Q12873 RNU5F-2P-201ENST00000516066 82 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 RNU6-1183P-201ENST00000517054 60 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC0.74□□□□□ -2.29
CHD3Q12873 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.74□□□□□ -2.29
CHD3Q12873 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC0.74□□□□□ -2.29
CHD3Q12873 VN1R83P-201ENST00000595685 445 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 Z82243.1-201ENST00000609432 473 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 AC099654.9-201ENST00000637055 678 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
CHD3Q12873 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.74□□□□□ -2.29
CHD3Q12873 snoZ40.1-201ENST00000364540 72 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 RNU6-1222P-201ENST00000384615 107 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 MIR146A-201ENST00000385201 99 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 AC019178.2-201ENST00000423595 505 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 AL355994.1-201ENST00000424379 260 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 TIMM9P1-201ENST00000436122 256 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 RPL37P6-201ENST00000460682 294 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 AC005908.1-201ENST00000468701 347 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 AC079395.1-201ENST00000510981 262 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 SNORA31.3-201ENST00000516029 96 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 AC104417.1-201ENST00000523974 751 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 OR5B19P-201ENST00000531766 928 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC0.74□□□□□ -2.29
CHD3Q12873 AC005668.1-201ENST00000571142 476 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 MIR3937-201ENST00000580135 106 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 AL512605.2-201ENST00000592972 256 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 BNIP3P27-201ENST00000599991 412 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 MTATP6P2-201ENST00000603319 678 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 AL355598.1-201ENST00000604169 202 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 AC091152.3-201ENST00000604227 325 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 AL022154.1-201ENST00000604698 785 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 RPL21P136-201ENST00000605378 396 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 AL365434.2-201ENST00000607979 234 ntBASIC0.74□□□□□ -2.29
CHD3Q12873 AC138393.1-203ENST00000327086 343 ntBASIC0.73□□□□□ -2.29
CHD3Q12873 RNU6-414P-201ENST00000363705 104 ntBASIC0.73□□□□□ -2.29
CHD3Q12873 RNU6-611P-201ENST00000384276 104 ntBASIC0.73□□□□□ -2.29
CHD3Q12873 AL357139.1-201ENST00000407792 426 ntBASIC0.73□□□□□ -2.29
CHD3Q12873 BTF3L4P3-201ENST00000418879 476 ntBASIC0.73□□□□□ -2.29
CHD3Q12873 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC0.73□□□□□ -2.29
CHD3Q12873 SEPT7P5-201ENST00000434048 306 ntBASIC0.73□□□□□ -2.29
CHD3Q12873 RNA5SP269-201ENST00000459032 137 ntBASIC0.73□□□□□ -2.29
CHD3Q12873 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC0.73□□□□□ -2.29
CHD3Q12873 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC0.73□□□□□ -2.29
CHD3Q12873 MTND5P13-201ENST00000513046 1079 ntBASIC0.73□□□□□ -2.29
CHD3Q12873 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC0.73□□□□□ -2.29
CHD3Q12873 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC0.73□□□□□ -2.29
CHD3Q12873 AC021451.1-201ENST00000523498 1129 ntBASIC0.73□□□□□ -2.29
CHD3Q12873 AC079598.5-201ENST00000547460 117 ntBASIC0.73□□□□□ -2.29
CHD3Q12873 AC126365.2-201ENST00000580630 379 ntBASIC0.73□□□□□ -2.29
CHD3Q12873 AC073544.2-201ENST00000601155 540 ntBASIC0.73□□□□□ -2.29
CHD3Q12873 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC0.73□□□□□ -2.29
CHD3Q12873 AP001485.1-201ENST00000604799 199 ntBASIC0.73□□□□□ -2.29
CHD3Q12873 RNU6-88P-201ENST00000606801 100 ntBASIC0.73□□□□□ -2.29
CHD3Q12873 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC0.73□□□□□ -2.29
CHD3Q12873 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC0.73□□□□□ -2.29
CHD3Q12873 uc_338.15-201ENST00000615470 191 ntBASIC0.73□□□□□ -2.29
CHD3Q12873 AL132822.1-201ENST00000617063 513 ntBASIC0.73□□□□□ -2.29
CHD3Q12873 AL163152.1-201ENST00000642001 374 ntBASIC0.73□□□□□ -2.29
CHD3Q12873 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC0.72□□□□□ -2.29
CHD3Q12873 Y_RNA.258-201ENST00000364613 105 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 Y_RNA.458-201ENST00000384240 102 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 MIR218-1-201ENST00000384999 110 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 AL359634.1-202ENST00000404721 284 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 USP9YP33-201ENST00000412220 421 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 UBE2V1P4-201ENST00000425374 344 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 USP9YP35-201ENST00000435696 412 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC0.72□□□□□ -2.29
CHD3Q12873 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC0.72□□□□□ -2.29
CHD3Q12873 PAXBP1P1-201ENST00000449315 447 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC0.72□□□□□ -2.29
CHD3Q12873 CYP2C59P-201ENST00000457790 269 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 AC010631.1-201ENST00000474150 156 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 RPL30P6-201ENST00000475925 342 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 AC023632.1-201ENST00000518463 375 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC0.72□□□□□ -2.29
CHD3Q12873 AP003392.2-201ENST00000527269 208 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 LRRC6P1-201ENST00000532188 885 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 MTCO2P15-201ENST00000532655 656 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.72□□□□□ -2.29
CHD3Q12873 AC008751.2-201ENST00000597885 980 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 AL121890.5-201ENST00000620848 304 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 AC090517.3-201ENST00000625170 141 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 RNU5B-1-201ENST00000363286 116 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 RNU1-23P-201ENST00000363361 144 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 RNU6-97P-201ENST00000363387 104 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 Y_RNA.433-201ENST00000384089 102 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 SNORA12-201ENST00000391162 147 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 AL359704.1-201ENST00000411586 781 ntBASIC0.72□□□□□ -2.29
CHD3Q12873 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms