Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC093788.1-201ENST00000609356 927 ntBASIC1.89□□□□□ -2.11
SHMT2P34897 AL158063.1-201ENST00000615349 536 ntBASIC1.89□□□□□ -2.11
SHMT2P34897 U4atac.1-201ENST00000618345 95 ntBASIC1.89□□□□□ -2.11
SHMT2P34897 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC1.89□□□□□ -2.11
SHMT2P34897 AC099842.1-201ENST00000619919 596 ntBASIC1.89□□□□□ -2.11
SHMT2P34897 AL162373.1-201ENST00000620433 407 ntBASIC1.89□□□□□ -2.11
SHMT2P34897 YWHAEP7-203ENST00000622054 312 ntBASIC1.89□□□□□ -2.11
SHMT2P34897 DUXAP9-208ENST00000622815 614 ntBASIC1.89□□□□□ -2.11
SHMT2P34897 AC078883.4-201ENST00000623218 367 ntBASIC1.89□□□□□ -2.11
SHMT2P34897 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC1.89□□□□□ -2.11
SHMT2P34897 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.88□□□□□ -2.11
SHMT2P34897 OR4G2P-201ENST00000328113 903 ntBASIC1.88□□□□□ -2.11
SHMT2P34897 RNU6-116P-201ENST00000384042 109 ntBASIC1.88□□□□□ -2.11
SHMT2P34897 RNU6-348P-201ENST00000384386 107 ntBASIC1.88□□□□□ -2.11
SHMT2P34897 MIR95-201ENST00000385072 81 ntBASIC1.88□□□□□ -2.11
SHMT2P34897 AF228730.1-201ENST00000397972 663 ntBASIC1.88□□□□□ -2.11
SHMT2P34897 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC1.88□□□□□ -2.11
SHMT2P34897 AL030996.1-201ENST00000411430 235 ntBASIC1.88□□□□□ -2.11
SHMT2P34897 AC008267.5-201ENST00000424928 265 ntBASIC1.88□□□□□ -2.11
SHMT2P34897 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC1.88□□□□□ -2.11
SHMT2P34897 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC1.88□□□□□ -2.11
SHMT2P34897 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC1.88□□□□□ -2.11
SHMT2P34897 MTND2P4-201ENST00000445034 1004 ntBASIC1.88□□□□□ -2.11
SHMT2P34897 MTND1P27-201ENST00000451117 902 ntBASIC1.88□□□□□ -2.11
SHMT2P34897 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC1.88□□□□□ -2.11
SHMT2P34897 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC1.88□□□□□ -2.11
SHMT2P34897 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC1.88□□□□□ -2.11
SHMT2P34897 AC091965.2-201ENST00000512324 613 ntBASIC1.88□□□□□ -2.11
SHMT2P34897 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC1.88□□□□□ -2.11
SHMT2P34897 SNORA31.23-201ENST00000517219 133 ntBASIC1.88□□□□□ -2.11
SHMT2P34897 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.88□□□□□ -2.11
SHMT2P34897 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC1.88□□□□□ -2.11
SHMT2P34897 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC1.88□□□□□ -2.11
SHMT2P34897 MIR5692A1-201ENST00000580523 69 ntBASIC1.88□□□□□ -2.11
SHMT2P34897 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC1.88□□□□□ -2.11
SHMT2P34897 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC1.88□□□□□ -2.11
SHMT2P34897 AL096840.1-201ENST00000603287 93 ntBASIC1.88□□□□□ -2.11
SHMT2P34897 Z99497.2-201ENST00000603634 310 ntBASIC1.88□□□□□ -2.11
SHMT2P34897 AC098614.4-201ENST00000607601 462 ntBASIC1.88□□□□□ -2.11
SHMT2P34897 AC096772.1-201ENST00000609146 564 ntBASIC1.88□□□□□ -2.11
SHMT2P34897 AC109347.2-201ENST00000610220 349 ntBASIC1.88□□□□□ -2.11
SHMT2P34897 AC008147.4-201ENST00000617570 1204 ntBASIC1.88□□□□□ -2.11
SHMT2P34897 AP003400.5-201ENST00000624827 617 ntBASIC1.88□□□□□ -2.11
SHMT2P34897 ATM-228ENST00000639240 498 ntTSL 5 BASIC1.88□□□□□ -2.11
SHMT2P34897 ATM-230ENST00000640388 578 ntTSL 5 BASIC1.88□□□□□ -2.11
SHMT2P34897 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
SHMT2P34897 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
SHMT2P34897 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.87□□□□□ -2.11
SHMT2P34897 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
SHMT2P34897 RNU6-1010P-201ENST00000362757 107 ntBASIC1.87□□□□□ -2.11
SHMT2P34897 RNU6-181P-201ENST00000363225 107 ntBASIC1.87□□□□□ -2.11
SHMT2P34897 SNORD116-20-201ENST00000384529 92 ntBASIC1.87□□□□□ -2.11
SHMT2P34897 RNU2-63P-201ENST00000410792 194 ntBASIC1.87□□□□□ -2.11
SHMT2P34897 RNA5SP489-201ENST00000410986 109 ntBASIC1.87□□□□□ -2.11
SHMT2P34897 RNU6-607P-201ENST00000411283 108 ntBASIC1.87□□□□□ -2.11
SHMT2P34897 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC1.87□□□□□ -2.11
SHMT2P34897 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC1.87□□□□□ -2.11
SHMT2P34897 UBE2V1P10-201ENST00000414685 269 ntBASIC1.87□□□□□ -2.11
SHMT2P34897 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.87□□□□□ -2.11
SHMT2P34897 PIGFP2-201ENST00000421400 651 ntBASIC1.87□□□□□ -2.11
SHMT2P34897 AL669831.1-202ENST00000428504 417 ntBASIC1.87□□□□□ -2.11
SHMT2P34897 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC1.87□□□□□ -2.11
SHMT2P34897 GTF2IP13-201ENST00000438487 386 ntBASIC1.87□□□□□ -2.11
SHMT2P34897 USP9YP29-201ENST00000445112 563 ntBASIC1.87□□□□□ -2.11
SHMT2P34897 RPS29P15-201ENST00000458329 171 ntBASIC1.87□□□□□ -2.11
SHMT2P34897 MTCO3P9-201ENST00000506989 781 ntBASIC1.87□□□□□ -2.11
SHMT2P34897 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC1.87□□□□□ -2.11
SHMT2P34897 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC1.87□□□□□ -2.11
SHMT2P34897 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC1.87□□□□□ -2.11
SHMT2P34897 SNORA43.2-201ENST00000516652 128 ntBASIC1.87□□□□□ -2.11
SHMT2P34897 RNU6-445P-201ENST00000516949 107 ntBASIC1.87□□□□□ -2.11
SHMT2P34897 RNU6-430P-201ENST00000517078 107 ntBASIC1.87□□□□□ -2.11
SHMT2P34897 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.87□□□□□ -2.11
SHMT2P34897 AL158827.2-201ENST00000602494 330 ntBASIC1.87□□□□□ -2.11
SHMT2P34897 AC073410.2-201ENST00000603240 332 ntBASIC1.87□□□□□ -2.11
SHMT2P34897 Z84480.1-201ENST00000605131 311 ntBASIC1.87□□□□□ -2.11
SHMT2P34897 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC1.87□□□□□ -2.11
SHMT2P34897 AL161423.1-201ENST00000613700 262 ntBASIC1.87□□□□□ -2.11
SHMT2P34897 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC1.87□□□□□ -2.11
SHMT2P34897 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.87□□□□□ -2.11
SHMT2P34897 AL691447.3-201ENST00000635020 330 ntBASIC1.87□□□□□ -2.11
SHMT2P34897 U6.114-201ENST00000636407 96 ntBASIC1.87□□□□□ -2.11
SHMT2P34897 AP006437.1-201ENST00000641440 3685 ntBASIC1.87□□□□□ -2.11
SHMT2P34897 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
SHMT2P34897 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
SHMT2P34897 SNORD114-19-201ENST00000363072 75 ntBASIC1.86□□□□□ -2.11
SHMT2P34897 RNU6-1029P-201ENST00000384109 107 ntBASIC1.86□□□□□ -2.11
SHMT2P34897 RNU1-57P-201ENST00000384491 166 ntBASIC1.86□□□□□ -2.11
SHMT2P34897 RNU2-40P-201ENST00000410833 196 ntBASIC1.86□□□□□ -2.11
SHMT2P34897 CYCSP33-201ENST00000414485 327 ntBASIC1.86□□□□□ -2.11
SHMT2P34897 EIF1AXP1-201ENST00000419267 435 ntBASIC1.86□□□□□ -2.11
SHMT2P34897 AL445685.2-201ENST00000422551 342 ntBASIC1.86□□□□□ -2.11
SHMT2P34897 MTATP6P17-201ENST00000431030 672 ntBASIC1.86□□□□□ -2.11
SHMT2P34897 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.86□□□□□ -2.11
SHMT2P34897 HMGN2P3-201ENST00000433603 273 ntBASIC1.86□□□□□ -2.11
SHMT2P34897 AL596276.1-201ENST00000434465 418 ntBASIC1.86□□□□□ -2.11
SHMT2P34897 HMGN2P5-201ENST00000436882 273 ntBASIC1.86□□□□□ -2.11
SHMT2P34897 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.86□□□□□ -2.11
SHMT2P34897 C1DP4-201ENST00000455429 424 ntBASIC1.86□□□□□ -2.11
SHMT2P34897 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms