Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 PGBD4P6-201ENST00000421501 610 ntBASIC2.89□□□□□ -1.95
HOXC9P31274 AC093151.1-201ENST00000427711 313 ntBASIC2.89□□□□□ -1.95
HOXC9P31274 MTATP6P7-201ENST00000453315 681 ntBASIC2.89□□□□□ -1.95
HOXC9P31274 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXC9P31274 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXC9P31274 ADAM3A-203ENST00000461344 2157 ntBASIC2.89□□□□□ -1.95
HOXC9P31274 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.89□□□□□ -1.95
HOXC9P31274 HMGB1P30-201ENST00000492455 606 ntBASIC2.89□□□□□ -1.95
HOXC9P31274 RPL38P4-201ENST00000502376 214 ntBASIC2.89□□□□□ -1.95
HOXC9P31274 AC074344.1-201ENST00000512823 224 ntBASIC2.89□□□□□ -1.95
HOXC9P31274 LRRC34P2-201ENST00000514850 553 ntBASIC2.89□□□□□ -1.95
HOXC9P31274 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXC9P31274 AC092747.3-201ENST00000603769 301 ntBASIC2.89□□□□□ -1.95
HOXC9P31274 AC104237.2-201ENST00000612456 443 ntBASIC2.89□□□□□ -1.95
HOXC9P31274 AC002553.4-201ENST00000616896 331 ntBASIC2.89□□□□□ -1.95
HOXC9P31274 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXC9P31274 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.88□□□□□ -1.95
HOXC9P31274 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
HOXC9P31274 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.88□□□□□ -1.95
HOXC9P31274 SNORD14B-201ENST00000364533 90 ntBASIC2.88□□□□□ -1.95
HOXC9P31274 RNU6-898P-201ENST00000365627 104 ntBASIC2.88□□□□□ -1.95
HOXC9P31274 MIR514A2-201ENST00000385131 88 ntBASIC2.88□□□□□ -1.95
HOXC9P31274 MIR514A3-201ENST00000385132 88 ntBASIC2.88□□□□□ -1.95
HOXC9P31274 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
HOXC9P31274 SNRPEP10-201ENST00000420249 274 ntBASIC2.88□□□□□ -1.95
HOXC9P31274 ERLEC1P1-201ENST00000433806 578 ntBASIC2.88□□□□□ -1.95
HOXC9P31274 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.88□□□□□ -1.95
HOXC9P31274 RPS15AP5-201ENST00000436276 388 ntBASIC2.88□□□□□ -1.95
HOXC9P31274 AC233279.1-201ENST00000455300 423 ntBASIC2.88□□□□□ -1.95
HOXC9P31274 HMGN2P23-201ENST00000456759 269 ntBASIC2.88□□□□□ -1.95
HOXC9P31274 snoU109.2-201ENST00000459316 135 ntBASIC2.88□□□□□ -1.95
HOXC9P31274 RNU7-23P-201ENST00000459465 62 ntBASIC2.88□□□□□ -1.95
HOXC9P31274 DYNLL1P5-201ENST00000467158 270 ntBASIC2.88□□□□□ -1.95
HOXC9P31274 RPL21P93-201ENST00000480465 489 ntBASIC2.88□□□□□ -1.95
HOXC9P31274 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC2.88□□□□□ -1.95
HOXC9P31274 AC116337.1-201ENST00000509680 687 ntBASIC2.88□□□□□ -1.95
HOXC9P31274 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXC9P31274 RBM11P1-201ENST00000604951 799 ntBASIC2.88□□□□□ -1.95
HOXC9P31274 RNU6-89P-201ENST00000606519 100 ntBASIC2.88□□□□□ -1.95
HOXC9P31274 AC004852.3-201ENST00000614131 326 ntBASIC2.88□□□□□ -1.95
HOXC9P31274 AL031601.2-202ENST00000622650 282 ntBASIC2.88□□□□□ -1.95
HOXC9P31274 AC022418.1-201ENST00000624118 445 ntBASIC2.88□□□□□ -1.95
HOXC9P31274 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HOXC9P31274 RNA5SP99-201ENST00000364020 114 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 RNU6-384P-201ENST00000364900 104 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 Z98749.2-208ENST00000381646 500 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 MIR767-201ENST00000390228 109 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 RNU6-332P-201ENST00000391193 108 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 Y_RNA.615-201ENST00000410769 117 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
HOXC9P31274 AL353621.1-201ENST00000418219 243 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 BPY2DP-201ENST00000422208 265 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXC9P31274 HMGB1P9-201ENST00000429856 646 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 AL445646.1-201ENST00000431784 216 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 AL603825.1-201ENST00000438481 80 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 CALM1P1-201ENST00000442082 433 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 TRAPPC2P3-201ENST00000443200 321 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXC9P31274 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXC9P31274 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.87□□□□□ -1.95
HOXC9P31274 MTCYBP18-201ENST00000501056 747 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 MIR892C-201ENST00000516410 77 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 CENPUP1-201ENST00000526649 1202 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 NACAP3-201ENST00000552100 481 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 AC078814.3-201ENST00000553036 491 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 MIR4801-201ENST00000582704 82 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 AC060766.3-201ENST00000591442 263 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 VN1R80P-201ENST00000597126 338 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 AC002044.1-201ENST00000606707 158 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 AC092807.2-201ENST00000609367 243 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 MIR6132-201ENST00000622083 109 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 AC100810.6-201ENST00000638068 285 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.87□□□□□ -1.95
HOXC9P31274 AC010680.1-201ENST00000590024 3590 ntBASIC2.87□□□□□ -1.95
HOXC9P31274 AC110491.1-201ENST00000562191 2010 ntBASIC2.86□□□□□ -1.95
HOXC9P31274 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
HOXC9P31274 Y_RNA.373-201ENST00000365600 103 ntBASIC2.86□□□□□ -1.95
HOXC9P31274 RN7SKP123-201ENST00000410732 291 ntBASIC2.86□□□□□ -1.95
HOXC9P31274 POLHP1-201ENST00000411806 470 ntBASIC2.86□□□□□ -1.95
HOXC9P31274 AC023141.4-201ENST00000412031 328 ntBASIC2.86□□□□□ -1.95
HOXC9P31274 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC2.86□□□□□ -1.95
HOXC9P31274 CYCSP33-201ENST00000414485 327 ntBASIC2.86□□□□□ -1.95
HOXC9P31274 AC016831.2-201ENST00000417179 352 ntBASIC2.86□□□□□ -1.95
HOXC9P31274 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.86□□□□□ -1.95
HOXC9P31274 AL627311.1-201ENST00000431514 115 ntBASIC2.86□□□□□ -1.95
HOXC9P31274 RPL23AP58-201ENST00000440453 469 ntBASIC2.86□□□□□ -1.95
HOXC9P31274 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.86□□□□□ -1.95
HOXC9P31274 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.86□□□□□ -1.95
HOXC9P31274 BTF3P15-201ENST00000455606 336 ntBASIC2.86□□□□□ -1.95
HOXC9P31274 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.86□□□□□ -1.95
HOXC9P31274 RNU7-167P-201ENST00000459160 62 ntBASIC2.86□□□□□ -1.95
HOXC9P31274 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.86□□□□□ -1.95
HOXC9P31274 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.86□□□□□ -1.95
HOXC9P31274 RAC1P5-201ENST00000512182 576 ntBASIC2.86□□□□□ -1.95
HOXC9P31274 AP001094.1-201ENST00000579805 193 ntBASIC2.86□□□□□ -1.95
HOXC9P31274 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.86□□□□□ -1.95
HOXC9P31274 Z82243.1-201ENST00000609432 473 ntBASIC2.86□□□□□ -1.95
HOXC9P31274 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms