Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AC008526.1-201ENST00000509149 338 ntBASIC3.3□□□□□ -1.88
FOXN3O00409 AC074250.1-201ENST00000511117 192 ntBASIC3.3□□□□□ -1.88
FOXN3O00409 COPS8P3-201ENST00000526024 482 ntBASIC3.3□□□□□ -1.88
FOXN3O00409 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
FOXN3O00409 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.3□□□□□ -1.88
FOXN3O00409 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.3□□□□□ -1.88
FOXN3O00409 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC3.3□□□□□ -1.88
FOXN3O00409 AC091152.3-201ENST00000604227 325 ntBASIC3.3□□□□□ -1.88
FOXN3O00409 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
FOXN3O00409 AC084781.2-201ENST00000615568 161 ntBASIC3.3□□□□□ -1.88
FOXN3O00409 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
FOXN3O00409 AC012314.7-201ENST00000619693 93 ntBASIC3.3□□□□□ -1.88
FOXN3O00409 MIR622-201ENST00000638396 96 ntBASIC3.3□□□□□ -1.88
FOXN3O00409 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
FOXN3O00409 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
FOXN3O00409 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.3□□□□□ -1.88
FOXN3O00409 AC093831.2-201ENST00000624393 3427 ntBASIC3.3□□□□□ -1.88
FOXN3O00409 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
FOXN3O00409 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.3□□□□□ -1.88
FOXN3O00409 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
FOXN3O00409 ZNF736P3Y-201ENST00000428264 1465 ntBASIC3.29□□□□□ -1.88
FOXN3O00409 Y_RNA.162-201ENST00000363683 102 ntBASIC3.29□□□□□ -1.88
FOXN3O00409 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
FOXN3O00409 SNORD116-29-201ENST00000384516 83 ntBASIC3.29□□□□□ -1.88
FOXN3O00409 AC096649.2-201ENST00000416186 393 ntBASIC3.29□□□□□ -1.88
FOXN3O00409 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC3.29□□□□□ -1.88
FOXN3O00409 AL591043.1-201ENST00000432461 424 ntBASIC3.29□□□□□ -1.88
FOXN3O00409 AC236972.2-201ENST00000434979 310 ntBASIC3.29□□□□□ -1.88
FOXN3O00409 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.29□□□□□ -1.88
FOXN3O00409 AC006028.1-201ENST00000438379 402 ntBASIC3.29□□□□□ -1.88
FOXN3O00409 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC3.29□□□□□ -1.88
FOXN3O00409 AC130509.1-201ENST00000464158 433 ntBASIC3.29□□□□□ -1.88
FOXN3O00409 MED28P2-201ENST00000475771 317 ntBASIC3.29□□□□□ -1.88
FOXN3O00409 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.29□□□□□ -1.88
FOXN3O00409 AC096745.1-201ENST00000509945 370 ntBASIC3.29□□□□□ -1.88
FOXN3O00409 RNU5F-8P-201ENST00000515941 111 ntBASIC3.29□□□□□ -1.88
FOXN3O00409 RNA5SP385-201ENST00000515947 110 ntBASIC3.29□□□□□ -1.88
FOXN3O00409 RNU6-566P-201ENST00000516790 107 ntBASIC3.29□□□□□ -1.88
FOXN3O00409 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC3.29□□□□□ -1.88
FOXN3O00409 AC010186.2-204ENST00000537668 439 ntBASIC3.29□□□□□ -1.88
FOXN3O00409 AC093249.1-201ENST00000567049 203 ntBASIC3.29□□□□□ -1.88
FOXN3O00409 AC009163.5-201ENST00000575421 637 ntBASIC3.29□□□□□ -1.88
FOXN3O00409 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.29□□□□□ -1.88
FOXN3O00409 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.29□□□□□ -1.88
FOXN3O00409 Y_RNA.812-201ENST00000610788 101 ntBASIC3.29□□□□□ -1.88
FOXN3O00409 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC3.29□□□□□ -1.88
FOXN3O00409 Y_RNA.784-201ENST00000613803 101 ntBASIC3.29□□□□□ -1.88
FOXN3O00409 Y_RNA.787-201ENST00000616522 101 ntBASIC3.29□□□□□ -1.88
FOXN3O00409 Y_RNA.780-201ENST00000617336 101 ntBASIC3.29□□□□□ -1.88
FOXN3O00409 Y_RNA.801-201ENST00000619005 101 ntBASIC3.29□□□□□ -1.88
FOXN3O00409 AC244517.12-201ENST00000623581 663 ntBASIC3.29□□□□□ -1.88
FOXN3O00409 AC138627.2-201ENST00000624202 601 ntBASIC3.29□□□□□ -1.88
FOXN3O00409 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
FOXN3O00409 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.29□□□□□ -1.88
FOXN3O00409 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.29□□□□□ -1.88
FOXN3O00409 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
FOXN3O00409 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 SNORD116-11-201ENST00000383882 92 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 Y_RNA.431-201ENST00000384086 102 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 AL590004.1-201ENST00000405321 300 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 RNU6-370P-201ENST00000411008 104 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 AL139396.1-201ENST00000421137 167 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 RPS3AP52-201ENST00000435639 297 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 MTCYBP6-201ENST00000441810 138 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 UBBP3-201ENST00000445497 241 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 UQCRHP3-201ENST00000451503 251 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 AL441985.1-201ENST00000457727 251 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 SNRPGP7-201ENST00000469016 106 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 RN7SL504P-201ENST00000494496 287 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 MTCO1P29-201ENST00000496868 288 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 RNA5SP454-201ENST00000517231 127 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 AC109479.2-201ENST00000517842 174 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.28□□□□□ -1.88
FOXN3O00409 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.28□□□□□ -1.88
FOXN3O00409 AC100830.2-201ENST00000581636 240 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.28□□□□□ -1.88
FOXN3O00409 AC023043.2-201ENST00000589678 1026 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 AC024153.1-201ENST00000603103 365 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 AC009314.1-201ENST00000603871 304 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 AC019159.1-201ENST00000605094 187 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.28□□□□□ -1.88
FOXN3O00409 AL133215.3-201ENST00000609801 448 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 PART1_1.1-201ENST00000611761 217 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 U4.7-201ENST00000638126 106 ntBASIC3.28□□□□□ -1.88
FOXN3O00409 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
FOXN3O00409 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC3.28□□□□□ -1.88
FOXN3O00409 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.28□□□□□ -1.88
FOXN3O00409 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.28□□□□□ -1.88
FOXN3O00409 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
FOXN3O00409 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.89
FOXN3O00409 ZNF519P1-201ENST00000449011 1626 ntBASIC3.27□□□□□ -1.89
FOXN3O00409 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.27□□□□□ -1.89
FOXN3O00409 AC008669.1-201ENST00000565823 2178 ntBASIC3.27□□□□□ -1.89
FOXN3O00409 Y_RNA.135-201ENST00000363439 95 ntBASIC3.27□□□□□ -1.89
FOXN3O00409 SNORD56.5-201ENST00000364281 72 ntBASIC3.27□□□□□ -1.89
FOXN3O00409 SNORD21-201ENST00000383953 95 ntBASIC3.27□□□□□ -1.89
FOXN3O00409 RNU6-43P-201ENST00000384302 107 ntBASIC3.27□□□□□ -1.89
FOXN3O00409 RNU6-1297P-201ENST00000384415 104 ntBASIC3.27□□□□□ -1.89
FOXN3O00409 RPL21P75-201ENST00000396599 483 ntBASIC3.27□□□□□ -1.89
FOXN3O00409 RPL21P28-201ENST00000401418 483 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 123.6 ms