Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
TDP1Q9NUW8 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
TDP1Q9NUW8 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
TDP1Q9NUW8 Y_RNA.5-201ENST00000362334 102 ntBASIC3.45□□□□□ -1.86
TDP1Q9NUW8 Y_RNA.162-201ENST00000363683 102 ntBASIC3.45□□□□□ -1.86
TDP1Q9NUW8 Y_RNA.463-201ENST00000384271 102 ntBASIC3.45□□□□□ -1.86
TDP1Q9NUW8 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.45□□□□□ -1.86
TDP1Q9NUW8 AC243428.1-201ENST00000421099 264 ntBASIC3.45□□□□□ -1.86
TDP1Q9NUW8 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC3.45□□□□□ -1.86
TDP1Q9NUW8 BX276092.3-201ENST00000424182 230 ntBASIC3.45□□□□□ -1.86
TDP1Q9NUW8 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC3.45□□□□□ -1.86
TDP1Q9NUW8 AC125238.1-201ENST00000448842 249 ntBASIC3.45□□□□□ -1.86
TDP1Q9NUW8 AC006026.2-201ENST00000457376 180 ntBASIC3.45□□□□□ -1.86
TDP1Q9NUW8 RPL23AP67-201ENST00000465341 474 ntBASIC3.45□□□□□ -1.86
TDP1Q9NUW8 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC3.45□□□□□ -1.86
TDP1Q9NUW8 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC3.45□□□□□ -1.86
TDP1Q9NUW8 AC010265.1-201ENST00000513509 211 ntBASIC3.45□□□□□ -1.86
TDP1Q9NUW8 RNU6-470P-201ENST00000515954 104 ntBASIC3.45□□□□□ -1.86
TDP1Q9NUW8 RNU6-120P-201ENST00000516077 103 ntBASIC3.45□□□□□ -1.86
TDP1Q9NUW8 SCARNA13-201ENST00000516672 275 ntBASIC3.45□□□□□ -1.86
TDP1Q9NUW8 RNU6-307P-201ENST00000516743 106 ntBASIC3.45□□□□□ -1.86
TDP1Q9NUW8 RNU6-612P-201ENST00000516909 102 ntBASIC3.45□□□□□ -1.86
TDP1Q9NUW8 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
TDP1Q9NUW8 MIR3186-201ENST00000577404 85 ntBASIC3.45□□□□□ -1.86
TDP1Q9NUW8 MIR5047-201ENST00000579212 100 ntBASIC3.45□□□□□ -1.86
TDP1Q9NUW8 AC005899.2-201ENST00000584353 90 ntBASIC3.45□□□□□ -1.86
TDP1Q9NUW8 AC005034.5-201ENST00000604219 466 ntBASIC3.45□□□□□ -1.86
TDP1Q9NUW8 AL136164.4-201ENST00000625013 2135 ntBASIC3.45□□□□□ -1.86
TDP1Q9NUW8 AC244205.2-202ENST00000635781 342 ntBASIC3.45□□□□□ -1.86
TDP1Q9NUW8 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
TDP1Q9NUW8 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.45□□□□□ -1.86
TDP1Q9NUW8 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
TDP1Q9NUW8 AL513302.2-201ENST00000562313 1842 ntBASIC3.44□□□□□ -1.86
TDP1Q9NUW8 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
TDP1Q9NUW8 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
TDP1Q9NUW8 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
TDP1Q9NUW8 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC3.44□□□□□ -1.86
TDP1Q9NUW8 RNU6-105P-201ENST00000363909 104 ntBASIC3.44□□□□□ -1.86
TDP1Q9NUW8 Y_RNA.202-201ENST00000364083 110 ntBASIC3.44□□□□□ -1.86
TDP1Q9NUW8 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.44□□□□□ -1.86
TDP1Q9NUW8 MIR521-1-201ENST00000384902 87 ntBASIC3.44□□□□□ -1.86
TDP1Q9NUW8 MIR634-201ENST00000385208 97 ntBASIC3.44□□□□□ -1.86
TDP1Q9NUW8 RPL23AP50-201ENST00000434149 455 ntBASIC3.44□□□□□ -1.86
TDP1Q9NUW8 AC133134.1-201ENST00000466800 359 ntBASIC3.44□□□□□ -1.86
TDP1Q9NUW8 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC3.44□□□□□ -1.86
TDP1Q9NUW8 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.44□□□□□ -1.86
TDP1Q9NUW8 AP005902.1-201ENST00000521358 186 ntBASIC3.44□□□□□ -1.86
TDP1Q9NUW8 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.44□□□□□ -1.86
TDP1Q9NUW8 AC021739.1-201ENST00000559631 174 ntBASIC3.44□□□□□ -1.86
TDP1Q9NUW8 MTCO3P13-201ENST00000577757 781 ntBASIC3.44□□□□□ -1.86
TDP1Q9NUW8 MIR4325-201ENST00000583049 90 ntBASIC3.44□□□□□ -1.86
TDP1Q9NUW8 MIR8076-201ENST00000611401 83 ntBASIC3.44□□□□□ -1.86
TDP1Q9NUW8 AC040896.1-201ENST00000613819 479 ntBASIC3.44□□□□□ -1.86
TDP1Q9NUW8 AC006111.3-201ENST00000622137 383 ntBASIC3.44□□□□□ -1.86
TDP1Q9NUW8 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
TDP1Q9NUW8 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.43□□□□□ -1.86
TDP1Q9NUW8 AL353743.1-202ENST00000431724 1695 ntBASIC3.43□□□□□ -1.86
TDP1Q9NUW8 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
TDP1Q9NUW8 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
TDP1Q9NUW8 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
TDP1Q9NUW8 SNORA22B-201ENST00000383876 138 ntBASIC3.43□□□□□ -1.86
TDP1Q9NUW8 RNU6-198P-201ENST00000384258 104 ntBASIC3.43□□□□□ -1.86
TDP1Q9NUW8 SNORA41-201ENST00000384675 132 ntBASIC3.43□□□□□ -1.86
TDP1Q9NUW8 RNA5SP252-201ENST00000391131 119 ntBASIC3.43□□□□□ -1.86
TDP1Q9NUW8 RNU6-55P-201ENST00000411092 107 ntBASIC3.43□□□□□ -1.86
TDP1Q9NUW8 MTND3P9-201ENST00000429526 346 ntBASIC3.43□□□□□ -1.86
TDP1Q9NUW8 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.43□□□□□ -1.86
TDP1Q9NUW8 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.43□□□□□ -1.86
TDP1Q9NUW8 RPS29P27-201ENST00000463711 170 ntBASIC3.43□□□□□ -1.86
TDP1Q9NUW8 AC109925.1-201ENST00000478069 331 ntBASIC3.43□□□□□ -1.86
TDP1Q9NUW8 FO393415.2-201ENST00000480085 343 ntBASIC3.43□□□□□ -1.86
TDP1Q9NUW8 RPL23AP49-201ENST00000492925 468 ntBASIC3.43□□□□□ -1.86
TDP1Q9NUW8 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.43□□□□□ -1.86
TDP1Q9NUW8 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.43□□□□□ -1.86
TDP1Q9NUW8 AC022493.2-201ENST00000506122 481 ntBASIC3.43□□□□□ -1.86
TDP1Q9NUW8 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.43□□□□□ -1.86
TDP1Q9NUW8 RNU6-581P-201ENST00000516214 105 ntBASIC3.43□□□□□ -1.86
TDP1Q9NUW8 AC010186.2-204ENST00000537668 439 ntBASIC3.43□□□□□ -1.86
TDP1Q9NUW8 AC006199.1-201ENST00000548728 219 ntBASIC3.43□□□□□ -1.86
TDP1Q9NUW8 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.43□□□□□ -1.86
TDP1Q9NUW8 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.43□□□□□ -1.86
TDP1Q9NUW8 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.43□□□□□ -1.86
TDP1Q9NUW8 MIR4273-201ENST00000582824 84 ntBASIC3.43□□□□□ -1.86
TDP1Q9NUW8 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
TDP1Q9NUW8 PART1_1.1-201ENST00000611761 217 ntBASIC3.43□□□□□ -1.86
TDP1Q9NUW8 AC097372.5-201ENST00000623665 376 ntBASIC3.43□□□□□ -1.86
TDP1Q9NUW8 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.43□□□□□ -1.86
TDP1Q9NUW8 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
TDP1Q9NUW8 ADAM3A-203ENST00000461344 2157 ntBASIC3.43□□□□□ -1.86
TDP1Q9NUW8 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
TDP1Q9NUW8 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.43□□□□□ -1.86
TDP1Q9NUW8 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.43□□□□□ -1.86
TDP1Q9NUW8 AC010680.1-201ENST00000590024 3590 ntBASIC3.42□□□□□ -1.86
TDP1Q9NUW8 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.42□□□□□ -1.86
TDP1Q9NUW8 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.42□□□□□ -1.86
TDP1Q9NUW8 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
TDP1Q9NUW8 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
TDP1Q9NUW8 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
TDP1Q9NUW8 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
TDP1Q9NUW8 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 122.9 ms