Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AP000553.5-201ENST00000641933 54 ntBASIC2.32□□□□□ -2.04
CCDC28BQ9BUN5 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC28BQ9BUN5 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC28BQ9BUN5 AC080100.1-201ENST00000624239 5356 ntBASIC2.32□□□□□ -2.04
CCDC28BQ9BUN5 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 OR56A5-201ENST00000340110 738 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 SNORD14B-201ENST00000364533 90 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 MIR34A-201ENST00000385130 110 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 MIR524-201ENST00000385242 87 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 RNU2-3P-201ENST00000410144 191 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 RBMX2P4-201ENST00000441256 376 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 HMGN2P10-201ENST00000448085 265 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 AL583843.1-201ENST00000456070 346 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 RNU6-1208P-201ENST00000459588 107 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 RPL7P49-201ENST00000471402 708 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 RPL31P41-201ENST00000477967 372 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 RPS27P26-201ENST00000494583 239 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 MTND3P25-201ENST00000509243 135 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 RN7SKP24-201ENST00000515888 284 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 AC022634.1-201ENST00000520765 532 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 AC090115.3-201ENST00000553218 849 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 AC025281.1-201ENST00000567026 265 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 AC087045.1-201ENST00000605856 382 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 AC245884.12-201ENST00000615364 59 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 MIR6134-201ENST00000617606 109 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 AC103705.1-201ENST00000619013 241 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 AL031601.2-202ENST00000622650 282 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 MIR203B-201ENST00000636080 86 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 AC121333.1-201ENST00000567488 2709 ntBASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
CCDC28BQ9BUN5 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 SNORD3E-201ENST00000362899 217 ntBASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 RNU1-105P-201ENST00000363470 161 ntBASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 U3.12-201ENST00000364498 214 ntBASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 Z98749.2-208ENST00000381646 500 ntBASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 RNU4-52P-201ENST00000384209 138 ntBASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 RN7SKP27-201ENST00000410684 333 ntBASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 NFU1P2-201ENST00000448700 469 ntBASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 HMGN2P26-201ENST00000463169 339 ntBASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 DYNLL1P5-201ENST00000467158 270 ntBASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 RPS29P20-201ENST00000489592 171 ntBASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 RNU6-189P-201ENST00000516120 101 ntBASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 RNU6-358P-201ENST00000516564 75 ntBASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 CYCSP27-201ENST00000527643 293 ntBASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 MIR1254-2-201ENST00000579553 63 ntBASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 MIR4429-201ENST00000580105 73 ntBASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 RPS15AP11-201ENST00000594193 385 ntBASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC28BQ9BUN5 CDC27P3-201ENST00000635418 1910 ntBASIC2.29□□□□□ -2.04
CCDC28BQ9BUN5 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
CCDC28BQ9BUN5 AL596028.1-201ENST00000326971 197 ntBASIC2.29□□□□□ -2.04
CCDC28BQ9BUN5 RNU6-522P-201ENST00000364497 107 ntBASIC2.29□□□□□ -2.04
CCDC28BQ9BUN5 RNU6-384P-201ENST00000364900 104 ntBASIC2.29□□□□□ -2.04
CCDC28BQ9BUN5 MIR518D-201ENST00000385014 87 ntBASIC2.29□□□□□ -2.04
CCDC28BQ9BUN5 FGF7P8-201ENST00000402994 292 ntBASIC2.29□□□□□ -2.04
CCDC28BQ9BUN5 RNU4-26P-201ENST00000410270 107 ntBASIC2.29□□□□□ -2.04
CCDC28BQ9BUN5 POLHP1-201ENST00000411806 470 ntBASIC2.29□□□□□ -2.04
CCDC28BQ9BUN5 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.29□□□□□ -2.04
CCDC28BQ9BUN5 CYCSP33-201ENST00000414485 327 ntBASIC2.29□□□□□ -2.04
CCDC28BQ9BUN5 AC096649.2-201ENST00000416186 393 ntBASIC2.29□□□□□ -2.04
CCDC28BQ9BUN5 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC28BQ9BUN5 COTL1P1-201ENST00000422309 375 ntBASIC2.29□□□□□ -2.04
CCDC28BQ9BUN5 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.29□□□□□ -2.04
CCDC28BQ9BUN5 RPS15AP5-201ENST00000436276 388 ntBASIC2.29□□□□□ -2.04
CCDC28BQ9BUN5 AL121601.2-201ENST00000438019 707 ntBASIC2.29□□□□□ -2.04
CCDC28BQ9BUN5 BTF3P15-201ENST00000455606 336 ntBASIC2.29□□□□□ -2.04
CCDC28BQ9BUN5 SNORD109B-201ENST00000458961 67 ntBASIC2.29□□□□□ -2.04
CCDC28BQ9BUN5 SNORD109A-201ENST00000459128 67 ntBASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 119.9 ms