Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC139712.2-201ENST00000424302 339 ntBASIC3.68□□□□□ -1.82
CLIP3Q96DZ5 AC098831.1-201ENST00000440661 216 ntBASIC3.68□□□□□ -1.82
CLIP3Q96DZ5 RNU7-138P-201ENST00000459479 64 ntBASIC3.68□□□□□ -1.82
CLIP3Q96DZ5 RPL17P19-201ENST00000489069 552 ntBASIC3.68□□□□□ -1.82
CLIP3Q96DZ5 PHBP14-201ENST00000512887 367 ntBASIC3.68□□□□□ -1.82
CLIP3Q96DZ5 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC3.68□□□□□ -1.82
CLIP3Q96DZ5 AC069113.1-201ENST00000517763 267 ntBASIC3.68□□□□□ -1.82
CLIP3Q96DZ5 AC093331.1-201ENST00000521474 169 ntBASIC3.68□□□□□ -1.82
CLIP3Q96DZ5 AC022695.1-201ENST00000522089 237 ntBASIC3.68□□□□□ -1.82
CLIP3Q96DZ5 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC3.68□□□□□ -1.82
CLIP3Q96DZ5 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.68□□□□□ -1.82
CLIP3Q96DZ5 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.68□□□□□ -1.82
CLIP3Q96DZ5 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CLIP3Q96DZ5 AC137590.2-201ENST00000619709 240 ntBASIC3.68□□□□□ -1.82
CLIP3Q96DZ5 U2.22-201ENST00000636441 106 ntBASIC3.68□□□□□ -1.82
CLIP3Q96DZ5 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
CLIP3Q96DZ5 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.68□□□□□ -1.82
CLIP3Q96DZ5 AC007496.3-201ENST00000624987 3443 ntBASIC3.68□□□□□ -1.82
CLIP3Q96DZ5 MAPK10-322ENST00000641485 4530 ntBASIC3.68□□□□□ -1.82
CLIP3Q96DZ5 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CLIP3Q96DZ5 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 AC110774.1-201ENST00000623567 2018 ntBASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 Y_RNA.64-201ENST00000362845 102 ntBASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 RNU1-18P-201ENST00000363062 164 ntBASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 Y_RNA.324-201ENST00000365165 102 ntBASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 RNU1-101P-201ENST00000391171 127 ntBASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 MIR1302-6-201ENST00000408466 90 ntBASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 RNU6-1156P-201ENST00000410365 100 ntBASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 AC005300.1-201ENST00000428401 373 ntBASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 FCF1P4-201ENST00000448326 183 ntBASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 SNORA25.11-201ENST00000515935 105 ntBASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 AC022080.3-201ENST00000544433 482 ntBASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 AL451007.1-201ENST00000595491 289 ntBASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 AC096772.1-201ENST00000609146 564 ntBASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 AC098479.1-201ENST00000609225 154 ntBASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.67□□□□□ -1.82
CLIP3Q96DZ5 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 RNA5SP124-201ENST00000362739 110 ntBASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 Y_RNA.117-201ENST00000363294 101 ntBASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 RNY3P11-201ENST00000364153 102 ntBASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 Y_RNA.477-201ENST00000384352 108 ntBASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 RNA5SP171-201ENST00000391071 115 ntBASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 RNU6-1093P-201ENST00000391194 107 ntBASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 RNA5SP31-201ENST00000411144 127 ntBASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 RAB9AP3-201ENST00000412737 573 ntBASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 AL591419.1-201ENST00000427423 339 ntBASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 HMGN2P10-201ENST00000448085 265 ntBASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 RAB9AP1-201ENST00000449393 573 ntBASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 AL031274.1-201ENST00000450334 232 ntBASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 MTND4LP30-201ENST00000454092 297 ntBASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 GZMAP1-201ENST00000503054 631 ntBASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 RNA5SP164-201ENST00000516533 110 ntBASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 AC087499.8-201ENST00000578406 226 ntBASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 AC008739.3-201ENST00000603262 127 ntBASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 AC024220.1-201ENST00000603675 484 ntBASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 MIR6134-201ENST00000617606 109 ntBASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 AC012442.3-202ENST00000636742 206 ntBASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.66□□□□□ -1.82
CLIP3Q96DZ5 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CLIP3Q96DZ5 ADAM3A-203ENST00000461344 2157 ntBASIC3.65□□□□□ -1.82
CLIP3Q96DZ5 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CLIP3Q96DZ5 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.82
CLIP3Q96DZ5 SNORA20.1-201ENST00000364790 130 ntBASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 Y_RNA.551-201ENST00000384661 102 ntBASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 SNORD73A-201ENST00000386062 65 ntBASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 AC245291.1-201ENST00000419501 328 ntBASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 AL590135.1-201ENST00000422215 156 ntBASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 AL353997.1-201ENST00000432936 108 ntBASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 RPS15AP5-201ENST00000436276 388 ntBASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 AC026726.1-201ENST00000512859 601 ntBASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 RNU6-138P-201ENST00000515952 107 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 161.7 ms