Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC2.09□□□□□ -2.07
COL4A4P53420 RNU6-1088P-201ENST00000516850 104 ntBASIC2.09□□□□□ -2.07
COL4A4P53420 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC2.09□□□□□ -2.07
COL4A4P53420 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC2.09□□□□□ -2.07
COL4A4P53420 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.09□□□□□ -2.07
COL4A4P53420 OR4R1P-201ENST00000529879 463 ntBASIC2.09□□□□□ -2.07
COL4A4P53420 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC2.09□□□□□ -2.07
COL4A4P53420 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.09□□□□□ -2.07
COL4A4P53420 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.09□□□□□ -2.07
COL4A4P53420 SNORD39.3-201ENST00000584451 71 ntBASIC2.09□□□□□ -2.07
COL4A4P53420 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC2.09□□□□□ -2.07
COL4A4P53420 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC2.09□□□□□ -2.07
COL4A4P53420 AL078596.1-201ENST00000624856 447 ntBASIC2.09□□□□□ -2.07
COL4A4P53420 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC2.09□□□□□ -2.07
COL4A4P53420 TTK-211ENST00000627129 240 ntTSL 5 BASIC2.09□□□□□ -2.07
COL4A4P53420 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
COL4A4P53420 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.07
COL4A4P53420 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.09□□□□□ -2.07
COL4A4P53420 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
COL4A4P53420 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.09□□□□□ -2.08
COL4A4P53420 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC2.09□□□□□ -2.08
COL4A4P53420 AC073343.1-201ENST00000328239 651 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 RNU5E-1-201ENST00000362477 120 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 Y_RNA.401-201ENST00000383965 117 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC2.09□□□□□ -2.08
COL4A4P53420 AL356421.1-201ENST00000403255 413 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 RNU4-14P-201ENST00000410858 122 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC2.09□□□□□ -2.08
COL4A4P53420 AC009161.1-201ENST00000417306 376 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC2.09□□□□□ -2.08
COL4A4P53420 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC2.09□□□□□ -2.08
COL4A4P53420 ERLEC1P1-201ENST00000433806 578 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.09□□□□□ -2.08
COL4A4P53420 AP1S2P1-201ENST00000457344 379 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 MTCO3P2-201ENST00000457365 171 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 AC007547.1-201ENST00000462177 490 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 MTCO2P29-201ENST00000465212 189 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 PABPC1P3-201ENST00000469174 459 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC2.09□□□□□ -2.08
COL4A4P53420 Y_RNA.691-201ENST00000516611 103 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 RNU6-264P-201ENST00000517134 104 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 BTF3P12-201ENST00000519620 469 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 AC105029.1-201ENST00000520250 669 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC2.09□□□□□ -2.08
COL4A4P53420 COX6CP5-201ENST00000527162 228 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.09□□□□□ -2.08
COL4A4P53420 MIR4503-201ENST00000582187 83 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC2.09□□□□□ -2.08
COL4A4P53420 AC098848.2-201ENST00000588023 330 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 AC008687.2-201ENST00000597865 520 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 BBIP1P1-201ENST00000602999 279 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 XIAPP1-201ENST00000603162 600 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 7SK.7-201ENST00000603504 247 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 DPPA3P3-201ENST00000603842 430 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 MIR6504-201ENST00000613520 61 ntBASIC2.09□□□□□ -2.08
COL4A4P53420 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.08□□□□□ -2.08
COL4A4P53420 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.08□□□□□ -2.08
COL4A4P53420 RNA5SP37-201ENST00000365420 130 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 Y_RNA.373-201ENST00000365600 103 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 RNU6-639P-201ENST00000384074 107 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 RNU6-225P-201ENST00000384613 103 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 MT-TG-201ENST00000387429 68 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 RNU6-1106P-201ENST00000390845 107 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC2.08□□□□□ -2.08
COL4A4P53420 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC2.08□□□□□ -2.08
COL4A4P53420 AC006548.1-201ENST00000427470 102 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 HIGD1AP11-201ENST00000438361 280 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 AL137792.2-201ENST00000443484 235 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 AC002381.1-201ENST00000447049 280 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC2.08□□□□□ -2.08
COL4A4P53420 SNORD19B-201ENST00000459623 84 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.08□□□□□ -2.08
COL4A4P53420 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.08□□□□□ -2.08
COL4A4P53420 AL163973.1-201ENST00000484753 577 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC2.08□□□□□ -2.08
COL4A4P53420 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.08□□□□□ -2.08
COL4A4P53420 FAM206BP-201ENST00000510179 541 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.08□□□□□ -2.08
COL4A4P53420 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC2.08□□□□□ -2.08
COL4A4P53420 SNORA31.11-201ENST00000516528 139 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 RNU6-566P-201ENST00000516790 107 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 Y_RNA.711-201ENST00000516993 102 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 AF279873.1-201ENST00000523393 313 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 AP003497.1-201ENST00000528472 562 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC2.08□□□□□ -2.08
COL4A4P53420 uc_338.5-201ENST00000611839 155 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 Y_RNA.783-201ENST00000613546 102 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 uc_338.15-201ENST00000615470 191 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 XIST_intron.1-201ENST00000619444 68 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 AC007792.1-201ENST00000623023 402 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 CR381572.1-201ENST00000625098 102 ntBASIC2.08□□□□□ -2.08
COL4A4P53420 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
COL4A4P53420 MTND5P33-201ENST00000571250 1450 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC2.07□□□□□ -2.08
COL4A4P53420 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.07□□□□□ -2.08
COL4A4P53420 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
COL4A4P53420 NACAP2-201ENST00000318548 624 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 Y_RNA.31-201ENST00000362574 102 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 Y_RNA.100-201ENST00000363141 102 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 Y_RNA.395-201ENST00000383945 109 ntBASIC2.07□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 141.2 ms