Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RNU6-43P-201ENST00000384302 107 ntBASIC3.56□□□□□ -1.84
VPS53Q5VIR6 Y_RNA.482-201ENST00000384377 111 ntBASIC3.56□□□□□ -1.84
VPS53Q5VIR6 SNORA44-201ENST00000384584 132 ntBASIC3.56□□□□□ -1.84
VPS53Q5VIR6 MIR578-201ENST00000384828 96 ntBASIC3.56□□□□□ -1.84
VPS53Q5VIR6 SNORA48.8-201ENST00000391324 134 ntBASIC3.56□□□□□ -1.84
VPS53Q5VIR6 AL590004.1-201ENST00000405321 300 ntBASIC3.56□□□□□ -1.84
VPS53Q5VIR6 RPL27AP5-201ENST00000469428 449 ntBASIC3.56□□□□□ -1.84
VPS53Q5VIR6 AC087884.1-201ENST00000469738 328 ntBASIC3.56□□□□□ -1.84
VPS53Q5VIR6 RPL7P5-201ENST00000471472 736 ntBASIC3.56□□□□□ -1.84
VPS53Q5VIR6 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS53Q5VIR6 RPS27P27-201ENST00000498779 255 ntBASIC3.56□□□□□ -1.84
VPS53Q5VIR6 AC008716.1-201ENST00000511084 513 ntBASIC3.56□□□□□ -1.84
VPS53Q5VIR6 RNU6-1315P-201ENST00000517187 99 ntBASIC3.56□□□□□ -1.84
VPS53Q5VIR6 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS53Q5VIR6 LRRC37A5P-203ENST00000580181 585 ntBASIC3.56□□□□□ -1.84
VPS53Q5VIR6 AC078795.3-201ENST00000602913 472 ntBASIC3.56□□□□□ -1.84
VPS53Q5VIR6 AC004852.3-201ENST00000614131 326 ntBASIC3.56□□□□□ -1.84
VPS53Q5VIR6 AC090971.5-201ENST00000621102 293 ntBASIC3.56□□□□□ -1.84
VPS53Q5VIR6 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
VPS53Q5VIR6 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VPS53Q5VIR6 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS53Q5VIR6 AC091564.4-201ENST00000533934 2194 ntBASIC3.55□□□□□ -1.84
VPS53Q5VIR6 GABRG2-229ENST00000641017 3628 ntBASIC3.55□□□□□ -1.84
VPS53Q5VIR6 Y_RNA.138-201ENST00000363462 102 ntBASIC3.55□□□□□ -1.84
VPS53Q5VIR6 RNU6-266P-201ENST00000364225 107 ntBASIC3.55□□□□□ -1.84
VPS53Q5VIR6 RNU6-593P-201ENST00000364716 112 ntBASIC3.55□□□□□ -1.84
VPS53Q5VIR6 Y_RNA.326-201ENST00000365176 113 ntBASIC3.55□□□□□ -1.84
VPS53Q5VIR6 AL138885.1-201ENST00000405921 675 ntBASIC3.55□□□□□ -1.84
VPS53Q5VIR6 RNU6-607P-201ENST00000411283 108 ntBASIC3.55□□□□□ -1.84
VPS53Q5VIR6 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS53Q5VIR6 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS53Q5VIR6 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS53Q5VIR6 Y_RNA.639-201ENST00000458981 102 ntBASIC3.55□□□□□ -1.84
VPS53Q5VIR6 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS53Q5VIR6 AC069113.1-201ENST00000517763 267 ntBASIC3.55□□□□□ -1.84
VPS53Q5VIR6 RNU6-323P-201ENST00000521915 107 ntBASIC3.55□□□□□ -1.84
VPS53Q5VIR6 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS53Q5VIR6 AC100830.2-201ENST00000581636 240 ntBASIC3.55□□□□□ -1.84
VPS53Q5VIR6 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS53Q5VIR6 AC022432.1-201ENST00000595739 310 ntBASIC3.55□□□□□ -1.84
VPS53Q5VIR6 AC005000.2-201ENST00000605468 310 ntBASIC3.55□□□□□ -1.84
VPS53Q5VIR6 USP12-203ENST00000620323 349 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS53Q5VIR6 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS53Q5VIR6 MTND4LP32-201ENST00000636111 270 ntBASIC3.55□□□□□ -1.84
VPS53Q5VIR6 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS53Q5VIR6 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS53Q5VIR6 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
VPS53Q5VIR6 SNORD42.2-201ENST00000365570 69 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 RNU6-395P-201ENST00000365662 106 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 RNU6-140P-201ENST00000384566 108 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 Y_RNA.579-201ENST00000390939 94 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 RNU6-370P-201ENST00000411008 104 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 AL353621.1-201ENST00000418219 243 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 BTF3L4P3-201ENST00000418879 476 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC3.54□□□□□ -1.84
VPS53Q5VIR6 AC099548.1-201ENST00000421443 426 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 TRIAP1P1-201ENST00000427062 225 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 AL359672.1-201ENST00000442302 409 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS53Q5VIR6 FABP5P15-201ENST00000453566 214 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS53Q5VIR6 AP004217.1-201ENST00000480579 346 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 AC026801.1-201ENST00000497178 464 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS53Q5VIR6 RNA5SP290-201ENST00000517133 127 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 SNORA31.21-201ENST00000517180 77 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 AP003122.3-201ENST00000526316 255 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 AC084851.1-201ENST00000529105 249 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 AP003072.1-201ENST00000531740 145 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 APOOP3-201ENST00000536787 586 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 AL157871.3-201ENST00000557231 293 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS53Q5VIR6 AC002044.1-201ENST00000606707 158 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 AC084781.2-201ENST00000615568 161 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 AC098657.3-201ENST00000620434 263 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 AC134503.1-201ENST00000633048 54 ntBASIC3.54□□□□□ -1.84
VPS53Q5VIR6 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.53□□□□□ -1.84
VPS53Q5VIR6 RNU6-525P-201ENST00000363685 104 ntBASIC3.53□□□□□ -1.84
VPS53Q5VIR6 RNU6-1303P-201ENST00000364841 107 ntBASIC3.53□□□□□ -1.84
VPS53Q5VIR6 MIR23A-201ENST00000385245 73 ntBASIC3.53□□□□□ -1.84
VPS53Q5VIR6 AL353729.1-201ENST00000425044 720 ntBASIC3.53□□□□□ -1.84
VPS53Q5VIR6 AL139132.1-201ENST00000431587 344 ntBASIC3.53□□□□□ -1.84
VPS53Q5VIR6 AC244505.4-201ENST00000434905 287 ntBASIC3.53□□□□□ -1.84
VPS53Q5VIR6 SSXP5-201ENST00000443473 287 ntBASIC3.53□□□□□ -1.84
VPS53Q5VIR6 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.53□□□□□ -1.84
VPS53Q5VIR6 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC3.53□□□□□ -1.84
VPS53Q5VIR6 RNU7-138P-201ENST00000459479 64 ntBASIC3.53□□□□□ -1.84
VPS53Q5VIR6 AC006483.1-201ENST00000487308 313 ntBASIC3.53□□□□□ -1.84
VPS53Q5VIR6 HMGB1P30-201ENST00000492455 606 ntBASIC3.53□□□□□ -1.84
VPS53Q5VIR6 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS53Q5VIR6 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS53Q5VIR6 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.53□□□□□ -1.84
VPS53Q5VIR6 RNU6-1332P-201ENST00000516666 104 ntBASIC3.53□□□□□ -1.84
VPS53Q5VIR6 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC3.53□□□□□ -1.84
VPS53Q5VIR6 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS53Q5VIR6 AP002404.1-201ENST00000532005 451 ntBASIC3.53□□□□□ -1.84
VPS53Q5VIR6 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC3.53□□□□□ -1.84
VPS53Q5VIR6 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms