Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Prpf40aQ9R1C7 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Prpf40aQ9R1C7 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Prpf40aQ9R1C7 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Prpf40aQ9R1C7 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Prpf40aQ9R1C7 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Prpf40aQ9R1C7 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Prpf40aQ9R1C7 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Prpf40aQ9R1C7 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Prpf40aQ9R1C7 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Prpf40aQ9R1C7 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Prpf40aQ9R1C7 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Prpf40aQ9R1C7 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Prpf40aQ9R1C7 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC17.79■□□□□ 0.44
Prpf40aQ9R1C7 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Prpf40aQ9R1C7 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Prpf40aQ9R1C7 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Prpf40aQ9R1C7 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Prpf40aQ9R1C7 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Prpf40aQ9R1C7 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Prpf40aQ9R1C7 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Prpf40aQ9R1C7 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Prpf40aQ9R1C7 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Prpf40aQ9R1C7 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Prpf40aQ9R1C7 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Prpf40aQ9R1C7 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Prpf40aQ9R1C7 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Prpf40aQ9R1C7 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Prpf40aQ9R1C7 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Prpf40aQ9R1C7 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC17.78■□□□□ 0.44
Prpf40aQ9R1C7 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC17.78■□□□□ 0.44
Prpf40aQ9R1C7 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC17.78■□□□□ 0.44
Prpf40aQ9R1C7 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Prpf40aQ9R1C7 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Prpf40aQ9R1C7 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Prpf40aQ9R1C7 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Prpf40aQ9R1C7 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Prpf40aQ9R1C7 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC17.78■□□□□ 0.44
Prpf40aQ9R1C7 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Prpf40aQ9R1C7 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Prpf40aQ9R1C7 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Prpf40aQ9R1C7 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Prpf40aQ9R1C7 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Prpf40aQ9R1C7 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Prpf40aQ9R1C7 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Prpf40aQ9R1C7 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Prpf40aQ9R1C7 Mir770-201ENSMUST00000103252 94 ntBASIC17.77■□□□□ 0.44
Prpf40aQ9R1C7 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Prpf40aQ9R1C7 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Prpf40aQ9R1C7 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC17.77■□□□□ 0.44
Prpf40aQ9R1C7 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC17.77■□□□□ 0.44
Prpf40aQ9R1C7 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
Prpf40aQ9R1C7 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Prpf40aQ9R1C7 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Prpf40aQ9R1C7 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Prpf40aQ9R1C7 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Prpf40aQ9R1C7 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Prpf40aQ9R1C7 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Prpf40aQ9R1C7 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Prpf40aQ9R1C7 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Prpf40aQ9R1C7 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Prpf40aQ9R1C7 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
Prpf40aQ9R1C7 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Prpf40aQ9R1C7 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Prpf40aQ9R1C7 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Prpf40aQ9R1C7 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Prpf40aQ9R1C7 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Prpf40aQ9R1C7 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Prpf40aQ9R1C7 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Prpf40aQ9R1C7 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Prpf40aQ9R1C7 Gm6623-201ENSMUST00000173570 544 ntBASIC17.76■□□□□ 0.43
Prpf40aQ9R1C7 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC17.76■□□□□ 0.43
Prpf40aQ9R1C7 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Prpf40aQ9R1C7 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Prpf40aQ9R1C7 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
Prpf40aQ9R1C7 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC17.76■□□□□ 0.43
Prpf40aQ9R1C7 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Prpf40aQ9R1C7 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Prpf40aQ9R1C7 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Prpf40aQ9R1C7 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Prpf40aQ9R1C7 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms