Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trim54Q9ERP3 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trim54Q9ERP3 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC17.46■□□□□ 0.39
Trim54Q9ERP3 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC17.46■□□□□ 0.39
Trim54Q9ERP3 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim54Q9ERP3 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trim54Q9ERP3 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim54Q9ERP3 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim54Q9ERP3 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim54Q9ERP3 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim54Q9ERP3 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim54Q9ERP3 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim54Q9ERP3 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Trim54Q9ERP3 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Gm4535-201ENSMUST00000182274 558 ntBASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC17.45■□□□□ 0.38
Trim54Q9ERP3 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Gm5712-201ENSMUST00000199748 1043 ntBASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Gm10355-201ENSMUST00000097146 517 ntBASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim54Q9ERP3 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim54Q9ERP3 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trim54Q9ERP3 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim54Q9ERP3 Gm25990-201ENSMUST00000102440 86 ntBASIC17.44■□□□□ 0.38
Trim54Q9ERP3 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trim54Q9ERP3 Gm8349-201ENSMUST00000182720 1003 ntBASIC17.44■□□□□ 0.38
Trim54Q9ERP3 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC17.44■□□□□ 0.38
Trim54Q9ERP3 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC17.44■□□□□ 0.38
Trim54Q9ERP3 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC17.44■□□□□ 0.38
Trim54Q9ERP3 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim54Q9ERP3 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim54Q9ERP3 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim54Q9ERP3 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim54Q9ERP3 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC17.44■□□□□ 0.38
Trim54Q9ERP3 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim54Q9ERP3 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
Trim54Q9ERP3 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim54Q9ERP3 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim54Q9ERP3 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim54Q9ERP3 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim54Q9ERP3 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim54Q9ERP3 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim54Q9ERP3 Gm4459-201ENSMUST00000118750 468 ntBASIC17.43■□□□□ 0.38
Trim54Q9ERP3 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC17.43■□□□□ 0.38
Trim54Q9ERP3 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC17.43■□□□□ 0.38
Trim54Q9ERP3 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim54Q9ERP3 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim54Q9ERP3 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Trim54Q9ERP3 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Trim54Q9ERP3 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
Trim54Q9ERP3 Gm43338-201ENSMUST00000198617 2223 ntBASIC17.43■□□□□ 0.38
Trim54Q9ERP3 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Trim54Q9ERP3 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Gm15173-201ENSMUST00000122049 433 ntBASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Gm37584-201ENSMUST00000193595 1290 ntBASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim54Q9ERP3 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms