Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Smc1aQ9CU62 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Smc1aQ9CU62 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Smc1aQ9CU62 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC18.08■□□□□ 0.48
Smc1aQ9CU62 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Smc1aQ9CU62 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC18.08■□□□□ 0.48
Smc1aQ9CU62 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Smc1aQ9CU62 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Smc1aQ9CU62 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Smc1aQ9CU62 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Smc1aQ9CU62 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Smc1aQ9CU62 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Smc1aQ9CU62 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC18.08■□□□□ 0.48
Smc1aQ9CU62 Gm36858-201ENSMUST00000194501 2391 ntBASIC18.08■□□□□ 0.48
Smc1aQ9CU62 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Smc1aQ9CU62 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Smc1aQ9CU62 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Smc1aQ9CU62 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Smc1aQ9CU62 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Smc1aQ9CU62 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Smc1aQ9CU62 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Smc1aQ9CU62 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Smc1aQ9CU62 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Smc1aQ9CU62 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
Smc1aQ9CU62 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Smc1aQ9CU62 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
Smc1aQ9CU62 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Smc1aQ9CU62 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Smc1aQ9CU62 Gm16011-201ENSMUST00000121567 2662 ntBASIC18.07■□□□□ 0.48
Smc1aQ9CU62 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Smc1aQ9CU62 AC133083.1-201ENSMUST00000221736 2209 ntBASIC18.07■□□□□ 0.48
Smc1aQ9CU62 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Smc1aQ9CU62 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Smc1aQ9CU62 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Smc1aQ9CU62 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC18.06■□□□□ 0.48
Smc1aQ9CU62 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Smc1aQ9CU62 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Smc1aQ9CU62 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Smc1aQ9CU62 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Smc1aQ9CU62 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC18.06■□□□□ 0.48
Smc1aQ9CU62 Gm27357-201ENSMUST00000183754 135 ntBASIC18.06■□□□□ 0.48
Smc1aQ9CU62 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Smc1aQ9CU62 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Smc1aQ9CU62 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Smc1aQ9CU62 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Smc1aQ9CU62 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC18.06■□□□□ 0.48
Smc1aQ9CU62 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Smc1aQ9CU62 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Smc1aQ9CU62 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Smc1aQ9CU62 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Smc1aQ9CU62 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Smc1aQ9CU62 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Smc1aQ9CU62 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Smc1aQ9CU62 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Actl10-202ENSMUST00000226583 1501 ntBASIC18.05■□□□□ 0.48
Smc1aQ9CU62 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Gm11860-201ENSMUST00000122346 1010 ntBASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Gm37722-201ENSMUST00000193757 208 ntBASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Otx2os1-206ENSMUST00000228153 787 ntBASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Smc1aQ9CU62 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Smc1aQ9CU62 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Smc1aQ9CU62 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Smc1aQ9CU62 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
Smc1aQ9CU62 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Smc1aQ9CU62 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Smc1aQ9CU62 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Smc1aQ9CU62 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Smc1aQ9CU62 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Smc1aQ9CU62 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Smc1aQ9CU62 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Smc1aQ9CU62 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Smc1aQ9CU62 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Smc1aQ9CU62 Mir770-201ENSMUST00000103252 94 ntBASIC18.04■□□□□ 0.48
Smc1aQ9CU62 Gm27742-201ENSMUST00000184667 60 ntBASIC18.04■□□□□ 0.48
Smc1aQ9CU62 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Smc1aQ9CU62 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
Smc1aQ9CU62 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Smc1aQ9CU62 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Smc1aQ9CU62 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Smc1aQ9CU62 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC18.03■□□□□ 0.48
Smc1aQ9CU62 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 51 ms