Protein–RNA interactions for Protein: Q9CR29

Ccdc43, Coiled-coil domain-containing protein 43, mousemouse

Known RBP Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc43Q9CR29 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Gm27389-201ENSMUST00000183622 195 ntBASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Gm18101-201ENSMUST00000215769 548 ntBASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc43Q9CR29 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc43Q9CR29 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc43Q9CR29 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc43Q9CR29 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc43Q9CR29 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc43Q9CR29 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC17.98■□□□□ 0.47
Ccdc43Q9CR29 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Ccdc43Q9CR29 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
Ccdc43Q9CR29 Gm26039-201ENSMUST00000158152 144 ntBASIC17.98■□□□□ 0.47
Ccdc43Q9CR29 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc43Q9CR29 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC17.98■□□□□ 0.47
Ccdc43Q9CR29 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC17.98■□□□□ 0.47
Ccdc43Q9CR29 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc43Q9CR29 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc43Q9CR29 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc43Q9CR29 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc43Q9CR29 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc43Q9CR29 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc43Q9CR29 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Ccdc43Q9CR29 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc43Q9CR29 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Ccdc43Q9CR29 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Ccdc43Q9CR29 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc43Q9CR29 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc43Q9CR29 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc43Q9CR29 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Ccdc43Q9CR29 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Ccdc43Q9CR29 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Ccdc43Q9CR29 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc43Q9CR29 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc43Q9CR29 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC17.97■□□□□ 0.47
Ccdc43Q9CR29 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC17.97■□□□□ 0.47
Ccdc43Q9CR29 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC17.97■□□□□ 0.47
Ccdc43Q9CR29 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Ccdc43Q9CR29 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC17.97■□□□□ 0.47
Ccdc43Q9CR29 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc43Q9CR29 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc43Q9CR29 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc43Q9CR29 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc43Q9CR29 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc43Q9CR29 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc43Q9CR29 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc43Q9CR29 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Ccdc43Q9CR29 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC17.96■□□□□ 0.47
Ccdc43Q9CR29 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc43Q9CR29 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc43Q9CR29 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc43Q9CR29 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc43Q9CR29 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc43Q9CR29 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Ccdc43Q9CR29 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC17.96■□□□□ 0.47
Ccdc43Q9CR29 Gm22697-201ENSMUST00000175194 63 ntBASIC17.96■□□□□ 0.47
Ccdc43Q9CR29 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC17.96■□□□□ 0.47
Ccdc43Q9CR29 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc43Q9CR29 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc43Q9CR29 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc43Q9CR29 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc43Q9CR29 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc43Q9CR29 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc43Q9CR29 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Ccdc43Q9CR29 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
Ccdc43Q9CR29 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC17.95■□□□□ 0.46
Ccdc43Q9CR29 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc43Q9CR29 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc43Q9CR29 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc43Q9CR29 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc43Q9CR29 Gm11336-201ENSMUST00000118168 334 ntBASIC17.95■□□□□ 0.46
Ccdc43Q9CR29 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc43Q9CR29 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc43Q9CR29 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc43Q9CR29 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
Ccdc43Q9CR29 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc43Q9CR29 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms