Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Clp1Q99LI9 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Clp1Q99LI9 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Clp1Q99LI9 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Clp1Q99LI9 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Clp1Q99LI9 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Clp1Q99LI9 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Clp1Q99LI9 Gm44487-201ENSMUST00000205145 325 ntBASIC17.02■□□□□ 0.32
Clp1Q99LI9 Gm45167-201ENSMUST00000208007 322 ntBASIC17.02■□□□□ 0.32
Clp1Q99LI9 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Clp1Q99LI9 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Clp1Q99LI9 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Clp1Q99LI9 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Clp1Q99LI9 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Clp1Q99LI9 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Clp1Q99LI9 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC17.01■□□□□ 0.31
Clp1Q99LI9 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC17.01■□□□□ 0.31
Clp1Q99LI9 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Clp1Q99LI9 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Clp1Q99LI9 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Clp1Q99LI9 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Clp1Q99LI9 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC17.01■□□□□ 0.31
Clp1Q99LI9 Rarb-207ENSMUST00000225921 2756 ntBASIC17.01■□□□□ 0.31
Clp1Q99LI9 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Clp1Q99LI9 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC17.01■□□□□ 0.31
Clp1Q99LI9 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Clp1Q99LI9 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Clp1Q99LI9 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Clp1Q99LI9 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Clp1Q99LI9 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Clp1Q99LI9 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Clp1Q99LI9 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Clp1Q99LI9 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Clp1Q99LI9 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC17■□□□□ 0.31
Clp1Q99LI9 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC17■□□□□ 0.31
Clp1Q99LI9 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC17■□□□□ 0.31
Clp1Q99LI9 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Clp1Q99LI9 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC17■□□□□ 0.31
Clp1Q99LI9 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Clp1Q99LI9 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Clp1Q99LI9 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Clp1Q99LI9 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Clp1Q99LI9 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Clp1Q99LI9 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Clp1Q99LI9 Gm11025-201ENSMUST00000140773 466 ntBASIC17■□□□□ 0.31
Clp1Q99LI9 Gm4899-201ENSMUST00000178708 719 ntBASIC17■□□□□ 0.31
Clp1Q99LI9 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC17■□□□□ 0.31
Clp1Q99LI9 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Clp1Q99LI9 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Clp1Q99LI9 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Clp1Q99LI9 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Clp1Q99LI9 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
Clp1Q99LI9 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Clp1Q99LI9 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Clp1Q99LI9 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Clp1Q99LI9 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Clp1Q99LI9 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Clp1Q99LI9 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Clp1Q99LI9 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Clp1Q99LI9 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Clp1Q99LI9 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC16.99■□□□□ 0.31
Clp1Q99LI9 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC16.99■□□□□ 0.31
Clp1Q99LI9 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
Clp1Q99LI9 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Clp1Q99LI9 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Clp1Q99LI9 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Clp1Q99LI9 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Clp1Q99LI9 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Clp1Q99LI9 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Clp1Q99LI9 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Clp1Q99LI9 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Clp1Q99LI9 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Clp1Q99LI9 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Clp1Q99LI9 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Clp1Q99LI9 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Clp1Q99LI9 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC16.98■□□□□ 0.31
Clp1Q99LI9 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC16.98■□□□□ 0.31
Clp1Q99LI9 Gm8344-201ENSMUST00000119813 856 ntBASIC16.98■□□□□ 0.31
Clp1Q99LI9 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Clp1Q99LI9 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC16.98■□□□□ 0.31
Clp1Q99LI9 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Clp1Q99LI9 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Clp1Q99LI9 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Clp1Q99LI9 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC16.97■□□□□ 0.31
Clp1Q99LI9 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Clp1Q99LI9 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Clp1Q99LI9 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Clp1Q99LI9 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Clp1Q99LI9 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Clp1Q99LI9 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
Clp1Q99LI9 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
Clp1Q99LI9 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC16.97■□□□□ 0.31
Clp1Q99LI9 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC16.97■□□□□ 0.31
Clp1Q99LI9 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Clp1Q99LI9 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC16.97■□□□□ 0.31
Clp1Q99LI9 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Clp1Q99LI9 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC16.97■□□□□ 0.31
Clp1Q99LI9 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Clp1Q99LI9 Gm8396-201ENSMUST00000057361 823 ntBASIC16.97■□□□□ 0.31
Clp1Q99LI9 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC16.97■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms