Protein–RNA interactions for Protein: Q8C2S0

Usp44, Ubiquitin carboxyl-terminal hydrolase 44, mousemouse

Predictions only

Length 711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp44Q8C2S0 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Usp44Q8C2S0 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Usp44Q8C2S0 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Usp44Q8C2S0 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Usp44Q8C2S0 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC18.93■□□□□ 0.62
Usp44Q8C2S0 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Usp44Q8C2S0 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Usp44Q8C2S0 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Usp44Q8C2S0 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Usp44Q8C2S0 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Usp44Q8C2S0 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Usp44Q8C2S0 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Usp44Q8C2S0 Rprl3-201ENSMUST00000157400 290 ntBASIC18.93■□□□□ 0.62
Usp44Q8C2S0 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Usp44Q8C2S0 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC18.93■□□□□ 0.62
Usp44Q8C2S0 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Usp44Q8C2S0 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Usp44Q8C2S0 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Usp44Q8C2S0 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Usp44Q8C2S0 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Usp44Q8C2S0 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Usp44Q8C2S0 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Usp44Q8C2S0 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usp44Q8C2S0 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Usp44Q8C2S0 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Usp44Q8C2S0 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usp44Q8C2S0 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
Usp44Q8C2S0 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Usp44Q8C2S0 Gm21362-201ENSMUST00000194272 928 ntBASIC18.92■□□□□ 0.62
Usp44Q8C2S0 Gm44454-201ENSMUST00000198541 138 ntBASIC18.92■□□□□ 0.62
Usp44Q8C2S0 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC18.92■□□□□ 0.62
Usp44Q8C2S0 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usp44Q8C2S0 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Usp44Q8C2S0 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Usp44Q8C2S0 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usp44Q8C2S0 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Usp44Q8C2S0 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usp44Q8C2S0 Gm9954-202ENSMUST00000198686 4725 ntBASIC18.92■□□□□ 0.62
Usp44Q8C2S0 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usp44Q8C2S0 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Usp44Q8C2S0 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usp44Q8C2S0 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
Usp44Q8C2S0 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usp44Q8C2S0 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usp44Q8C2S0 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usp44Q8C2S0 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usp44Q8C2S0 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC18.91■□□□□ 0.62
Usp44Q8C2S0 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC18.91■□□□□ 0.62
Usp44Q8C2S0 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC18.91■□□□□ 0.62
Usp44Q8C2S0 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Usp44Q8C2S0 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usp44Q8C2S0 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC18.91■□□□□ 0.62
Usp44Q8C2S0 AC124569.2-201ENSMUST00000225998 818 ntBASIC18.91■□□□□ 0.62
Usp44Q8C2S0 AC130671.1-201ENSMUST00000227384 1237 ntBASIC18.91■□□□□ 0.62
Usp44Q8C2S0 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usp44Q8C2S0 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usp44Q8C2S0 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usp44Q8C2S0 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usp44Q8C2S0 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Usp44Q8C2S0 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC18.91■□□□□ 0.62
Usp44Q8C2S0 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usp44Q8C2S0 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp44Q8C2S0 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp44Q8C2S0 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Usp44Q8C2S0 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp44Q8C2S0 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Usp44Q8C2S0 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp44Q8C2S0 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp44Q8C2S0 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC18.9■□□□□ 0.62
Usp44Q8C2S0 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp44Q8C2S0 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Usp44Q8C2S0 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp44Q8C2S0 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Usp44Q8C2S0 Gm17807-201ENSMUST00000186869 298 ntBASIC18.9■□□□□ 0.62
Usp44Q8C2S0 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp44Q8C2S0 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC18.9■□□□□ 0.62
Usp44Q8C2S0 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC18.9■□□□□ 0.62
Usp44Q8C2S0 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp44Q8C2S0 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp44Q8C2S0 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp44Q8C2S0 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp44Q8C2S0 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp44Q8C2S0 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Usp44Q8C2S0 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Usp44Q8C2S0 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Usp44Q8C2S0 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp44Q8C2S0 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
Usp44Q8C2S0 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC18.89■□□□□ 0.61
Usp44Q8C2S0 Gm15372-201ENSMUST00000120729 834 ntBASIC18.89■□□□□ 0.61
Usp44Q8C2S0 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Usp44Q8C2S0 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp44Q8C2S0 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Usp44Q8C2S0 AC153889.1-201ENSMUST00000219257 330 ntBASIC18.89■□□□□ 0.61
Usp44Q8C2S0 Gm7367-201ENSMUST00000057611 492 ntBASIC18.89■□□□□ 0.61
Usp44Q8C2S0 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp44Q8C2S0 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp44Q8C2S0 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp44Q8C2S0 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Usp44Q8C2S0 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp44Q8C2S0 Dancr-204ENSMUST00000132389 2347 ntBASIC18.89■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 54.6 ms