Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trub1Q8C0D0 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trub1Q8C0D0 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Trub1Q8C0D0 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Trub1Q8C0D0 Gm25016-201ENSMUST00000158399 131 ntBASIC16.69■□□□□ 0.26
Trub1Q8C0D0 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trub1Q8C0D0 Gm17808-201ENSMUST00000200859 894 ntBASIC16.69■□□□□ 0.26
Trub1Q8C0D0 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trub1Q8C0D0 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trub1Q8C0D0 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Trub1Q8C0D0 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trub1Q8C0D0 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trub1Q8C0D0 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Trub1Q8C0D0 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trub1Q8C0D0 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trub1Q8C0D0 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trub1Q8C0D0 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trub1Q8C0D0 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trub1Q8C0D0 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
Trub1Q8C0D0 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trub1Q8C0D0 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trub1Q8C0D0 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Trub1Q8C0D0 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trub1Q8C0D0 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trub1Q8C0D0 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Trub1Q8C0D0 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trub1Q8C0D0 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Trub1Q8C0D0 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Trub1Q8C0D0 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC16.68■□□□□ 0.26
Trub1Q8C0D0 AA414768-201ENSMUST00000121924 1257 ntBASIC16.68■□□□□ 0.26
Trub1Q8C0D0 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trub1Q8C0D0 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC16.68■□□□□ 0.26
Trub1Q8C0D0 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Trub1Q8C0D0 CT009713.7-201ENSMUST00000224689 571 ntBASIC16.68■□□□□ 0.26
Trub1Q8C0D0 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trub1Q8C0D0 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Trub1Q8C0D0 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trub1Q8C0D0 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trub1Q8C0D0 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trub1Q8C0D0 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trub1Q8C0D0 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trub1Q8C0D0 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trub1Q8C0D0 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trub1Q8C0D0 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trub1Q8C0D0 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Trub1Q8C0D0 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Trub1Q8C0D0 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trub1Q8C0D0 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Trub1Q8C0D0 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trub1Q8C0D0 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC16.66■□□□□ 0.26
Trub1Q8C0D0 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trub1Q8C0D0 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC16.66■□□□□ 0.26
Trub1Q8C0D0 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trub1Q8C0D0 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC16.66■□□□□ 0.26
Trub1Q8C0D0 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trub1Q8C0D0 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Trub1Q8C0D0 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trub1Q8C0D0 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trub1Q8C0D0 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trub1Q8C0D0 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms