Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 Gm27389-201ENSMUST00000183622 195 ntBASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 Gm8258-201ENSMUST00000055593 1449 ntBASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Ank2-226ENSMUST00000189368 339 ntBASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Gm21559-201ENSMUST00000220638 855 ntBASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Gm8587-201ENSMUST00000076538 843 ntBASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Sh3rf1Q69ZI1 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Sh3rf1Q69ZI1 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Sh3rf1Q69ZI1 Gm45203-201ENSMUST00000206384 1831 ntBASIC16.4■□□□□ 0.22
Sh3rf1Q69ZI1 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Sh3rf1Q69ZI1 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Sh3rf1Q69ZI1 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Sh3rf1Q69ZI1 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Sh3rf1Q69ZI1 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
Sh3rf1Q69ZI1 Gm9103-201ENSMUST00000119371 405 ntBASIC16.4■□□□□ 0.22
Sh3rf1Q69ZI1 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Sh3rf1Q69ZI1 Gm9731-201ENSMUST00000209480 747 ntBASIC16.4■□□□□ 0.22
Sh3rf1Q69ZI1 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Sh3rf1Q69ZI1 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Sh3rf1Q69ZI1 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Sh3rf1Q69ZI1 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Sh3rf1Q69ZI1 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Sh3rf1Q69ZI1 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Sh3rf1Q69ZI1 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Sh3rf1Q69ZI1 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Sh3rf1Q69ZI1 AC115863.1-201ENSMUST00000214815 1813 ntBASIC16.4■□□□□ 0.22
Sh3rf1Q69ZI1 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC16.4■□□□□ 0.22
Sh3rf1Q69ZI1 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Sh3rf1Q69ZI1 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Sh3rf1Q69ZI1 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Sh3rf1Q69ZI1 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Sh3rf1Q69ZI1 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Sh3rf1Q69ZI1 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Sh3rf1Q69ZI1 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC16.39■□□□□ 0.21
Sh3rf1Q69ZI1 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Sh3rf1Q69ZI1 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Sh3rf1Q69ZI1 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Sh3rf1Q69ZI1 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Sh3rf1Q69ZI1 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC16.39■□□□□ 0.21
Sh3rf1Q69ZI1 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Sh3rf1Q69ZI1 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Sh3rf1Q69ZI1 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Sh3rf1Q69ZI1 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Sh3rf1Q69ZI1 Spsb2-203ENSMUST00000112473 1322 ntBASIC16.39■□□□□ 0.21
Sh3rf1Q69ZI1 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
Sh3rf1Q69ZI1 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Sh3rf1Q69ZI1 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Sh3rf1Q69ZI1 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 36.1 ms