Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav6-3Q5R1E6 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav6-3Q5R1E6 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Gm13436-201ENSMUST00000120418 567 ntBASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Gm37055-201ENSMUST00000191866 133 ntBASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Trav6-3Q5R1E6 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Gm16011-201ENSMUST00000121567 2662 ntBASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Gm26039-201ENSMUST00000158152 144 ntBASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Gm9484-201ENSMUST00000195892 1159 ntBASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 AC122351.1-201ENSMUST00000220467 126 ntBASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 AC159205.6-201ENSMUST00000224935 887 ntBASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav6-3Q5R1E6 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Gm27011-201ENSMUST00000182352 972 ntBASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav6-3Q5R1E6 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms