Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp28Q5I043 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Usp28Q5I043 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp28Q5I043 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp28Q5I043 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp28Q5I043 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp28Q5I043 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Usp28Q5I043 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Usp28Q5I043 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp28Q5I043 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp28Q5I043 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp28Q5I043 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp28Q5I043 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usp28Q5I043 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Usp28Q5I043 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Usp28Q5I043 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC18.36■□□□□ 0.53
Usp28Q5I043 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC18.36■□□□□ 0.53
Usp28Q5I043 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
Usp28Q5I043 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Usp28Q5I043 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC18.36■□□□□ 0.53
Usp28Q5I043 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC18.36■□□□□ 0.53
Usp28Q5I043 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC18.36■□□□□ 0.53
Usp28Q5I043 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Usp28Q5I043 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Usp28Q5I043 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Usp28Q5I043 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Usp28Q5I043 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Usp28Q5I043 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Usp28Q5I043 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Usp28Q5I043 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Usp28Q5I043 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
Usp28Q5I043 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC18.35■□□□□ 0.53
Usp28Q5I043 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp28Q5I043 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp28Q5I043 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp28Q5I043 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC18.35■□□□□ 0.53
Usp28Q5I043 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Usp28Q5I043 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC18.35■□□□□ 0.53
Usp28Q5I043 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
Usp28Q5I043 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp28Q5I043 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Usp28Q5I043 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp28Q5I043 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC18.35■□□□□ 0.53
Usp28Q5I043 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
Usp28Q5I043 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp28Q5I043 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Usp28Q5I043 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usp28Q5I043 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Usp28Q5I043 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Usp28Q5I043 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC18.34■□□□□ 0.53
Usp28Q5I043 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Usp28Q5I043 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp28Q5I043 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Usp28Q5I043 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp28Q5I043 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC18.34■□□□□ 0.53
Usp28Q5I043 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Usp28Q5I043 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp28Q5I043 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Usp28Q5I043 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Usp28Q5I043 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp28Q5I043 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp28Q5I043 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp28Q5I043 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp28Q5I043 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC18.34■□□□□ 0.53
Usp28Q5I043 Gm21559-201ENSMUST00000220638 855 ntBASIC18.34■□□□□ 0.53
Usp28Q5I043 Gm8587-201ENSMUST00000076538 843 ntBASIC18.34■□□□□ 0.53
Usp28Q5I043 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp28Q5I043 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp28Q5I043 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Usp28Q5I043 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC18.34■□□□□ 0.53
Usp28Q5I043 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp28Q5I043 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usp28Q5I043 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Usp28Q5I043 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
Usp28Q5I043 Gm9889-202ENSMUST00000206983 1577 ntBASIC18.34■□□□□ 0.53
Usp28Q5I043 Zkscan4-202ENSMUST00000225845 1506 ntBASIC18.33■□□□□ 0.53
Usp28Q5I043 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
Usp28Q5I043 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Usp28Q5I043 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Usp28Q5I043 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Usp28Q5I043 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC18.33■□□□□ 0.53
Usp28Q5I043 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Usp28Q5I043 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Usp28Q5I043 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
Usp28Q5I043 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Usp28Q5I043 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC18.33■□□□□ 0.52
Usp28Q5I043 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC18.33■□□□□ 0.52
Usp28Q5I043 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Usp28Q5I043 AC122351.1-201ENSMUST00000220467 126 ntBASIC18.33■□□□□ 0.52
Usp28Q5I043 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC18.33■□□□□ 0.52
Usp28Q5I043 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp28Q5I043 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Usp28Q5I043 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp28Q5I043 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp28Q5I043 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC18.33■□□□□ 0.52
Usp28Q5I043 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp28Q5I043 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp28Q5I043 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp28Q5I043 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Usp28Q5I043 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 57.9 ms