Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ddb1Q3U1J4 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ddb1Q3U1J4 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ddb1Q3U1J4 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC20.47■□□□□ 0.87
Ddb1Q3U1J4 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Ddb1Q3U1J4 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Ddb1Q3U1J4 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Ddb1Q3U1J4 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC20.47■□□□□ 0.87
Ddb1Q3U1J4 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC20.47■□□□□ 0.87
Ddb1Q3U1J4 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ddb1Q3U1J4 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC20.47■□□□□ 0.87
Ddb1Q3U1J4 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ddb1Q3U1J4 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ddb1Q3U1J4 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC20.47■□□□□ 0.87
Ddb1Q3U1J4 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ddb1Q3U1J4 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Ddb1Q3U1J4 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 AC157650.3-201ENSMUST00000225058 1476 ntBASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Gm18489-201ENSMUST00000172565 551 ntBASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Gm5366-201ENSMUST00000215494 1338 ntBASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Fgf17-202ENSMUST00000227123 1336 ntBASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddb1Q3U1J4 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC20.45■□□□□ 0.87
Ddb1Q3U1J4 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
Ddb1Q3U1J4 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ddb1Q3U1J4 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ddb1Q3U1J4 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ddb1Q3U1J4 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ddb1Q3U1J4 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ddb1Q3U1J4 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC20.45■□□□□ 0.86
Ddb1Q3U1J4 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ddb1Q3U1J4 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Ddb1Q3U1J4 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC20.45■□□□□ 0.86
Ddb1Q3U1J4 Gm5177-201ENSMUST00000183092 997 ntBASIC20.45■□□□□ 0.86
Ddb1Q3U1J4 Gm27301-201ENSMUST00000184012 127 ntBASIC20.45■□□□□ 0.86
Ddb1Q3U1J4 AC131187.1-201ENSMUST00000224567 809 ntBASIC20.45■□□□□ 0.86
Ddb1Q3U1J4 AC151836.1-202ENSMUST00000226259 753 ntBASIC20.45■□□□□ 0.86
Ddb1Q3U1J4 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ddb1Q3U1J4 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ddb1Q3U1J4 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
Ddb1Q3U1J4 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Ddb1Q3U1J4 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC20.44■□□□□ 0.86
Ddb1Q3U1J4 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Ddb1Q3U1J4 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ddb1Q3U1J4 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC20.44■□□□□ 0.86
Ddb1Q3U1J4 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Ddb1Q3U1J4 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Ddb1Q3U1J4 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC20.44■□□□□ 0.86
Ddb1Q3U1J4 Gm11745-201ENSMUST00000121669 448 ntBASIC20.44■□□□□ 0.86
Ddb1Q3U1J4 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC20.44■□□□□ 0.86
Ddb1Q3U1J4 Gm25948-201ENSMUST00000175334 112 ntBASIC20.44■□□□□ 0.86
Ddb1Q3U1J4 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC20.44■□□□□ 0.86
Ddb1Q3U1J4 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Ddb1Q3U1J4 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ddb1Q3U1J4 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ddb1Q3U1J4 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ddb1Q3U1J4 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ddb1Q3U1J4 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ddb1Q3U1J4 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ddb1Q3U1J4 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ddb1Q3U1J4 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ddb1Q3U1J4 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC20.44■□□□□ 0.86
Ddb1Q3U1J4 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ddb1Q3U1J4 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ddb1Q3U1J4 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Ddb1Q3U1J4 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Ddb1Q3U1J4 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ddb1Q3U1J4 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Ddb1Q3U1J4 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Ddb1Q3U1J4 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Ddb1Q3U1J4 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC20.43■□□□□ 0.86
Ddb1Q3U1J4 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ddb1Q3U1J4 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ddb1Q3U1J4 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ddb1Q3U1J4 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC20.43■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms