Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Lig3P97386 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Lig3P97386 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Lig3P97386 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC17.61■□□□□ 0.41
Lig3P97386 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
Lig3P97386 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Lig3P97386 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Lig3P97386 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lig3P97386 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lig3P97386 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lig3P97386 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Lig3P97386 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lig3P97386 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
Lig3P97386 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC17.6■□□□□ 0.41
Lig3P97386 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lig3P97386 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC17.6■□□□□ 0.41
Lig3P97386 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC17.6■□□□□ 0.41
Lig3P97386 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lig3P97386 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lig3P97386 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Lig3P97386 Gm43272-201ENSMUST00000200599 1584 ntBASIC17.6■□□□□ 0.41
Lig3P97386 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lig3P97386 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Lig3P97386 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lig3P97386 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lig3P97386 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Lig3P97386 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lig3P97386 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Lig3P97386 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lig3P97386 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Lig3P97386 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lig3P97386 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC17.59■□□□□ 0.41
Lig3P97386 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lig3P97386 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC17.59■□□□□ 0.41
Lig3P97386 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC17.59■□□□□ 0.41
Lig3P97386 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC17.59■□□□□ 0.41
Lig3P97386 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC17.59■□□□□ 0.41
Lig3P97386 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lig3P97386 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lig3P97386 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lig3P97386 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lig3P97386 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lig3P97386 Gm16499-203ENSMUST00000204633 2177 ntBASIC17.59■□□□□ 0.41
Lig3P97386 Gm16401-202ENSMUST00000197463 2074 ntBASIC17.59■□□□□ 0.41
Lig3P97386 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Lig3P97386 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC17.58■□□□□ 0.41
Lig3P97386 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
Lig3P97386 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Lig3P97386 Gm26596-201ENSMUST00000180464 2655 ntBASIC17.58■□□□□ 0.41
Lig3P97386 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Lig3P97386 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Lig3P97386 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Lig3P97386 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Lig3P97386 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Lig3P97386 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Lig3P97386 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Lig3P97386 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC17.58■□□□□ 0.4
Lig3P97386 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC17.58■□□□□ 0.4
Lig3P97386 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Lig3P97386 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC17.58■□□□□ 0.4
Lig3P97386 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Lig3P97386 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Lig3P97386 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Lig3P97386 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Lig3P97386 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Lig3P97386 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Lig3P97386 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Lig3P97386 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Lig3P97386 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Lig3P97386 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Lig3P97386 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Lig3P97386 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Lig3P97386 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC17.57■□□□□ 0.4
Lig3P97386 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Lig3P97386 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Lig3P97386 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Lig3P97386 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Lig3P97386 Gm2651-201ENSMUST00000203560 838 ntBASIC17.57■□□□□ 0.4
Lig3P97386 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Lig3P97386 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC17.57■□□□□ 0.4
Lig3P97386 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Lig3P97386 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Lig3P97386 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
Lig3P97386 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Lig3P97386 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Lig3P97386 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Lig3P97386 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Lig3P97386 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Lig3P97386 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lig3P97386 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Lig3P97386 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC17.56■□□□□ 0.4
Lig3P97386 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lig3P97386 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC17.56■□□□□ 0.4
Lig3P97386 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lig3P97386 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lig3P97386 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lig3P97386 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Lig3P97386 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Lig3P97386 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Lig3P97386 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC17.56■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms