Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rfx1P48377 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rfx1P48377 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rfx1P48377 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Rfx1P48377 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rfx1P48377 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rfx1P48377 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rfx1P48377 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rfx1P48377 Gm6190-201ENSMUST00000220683 1374 ntBASIC19.36■□□□□ 0.69
Rfx1P48377 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rfx1P48377 Gm29340-201ENSMUST00000188763 3854 ntBASIC19.36■□□□□ 0.69
Rfx1P48377 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Rfx1P48377 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Rfx1P48377 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC19.36■□□□□ 0.69
Rfx1P48377 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rfx1P48377 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC19.36■□□□□ 0.69
Rfx1P48377 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rfx1P48377 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rfx1P48377 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rfx1P48377 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rfx1P48377 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Rfx1P48377 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rfx1P48377 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rfx1P48377 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Rfx1P48377 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rfx1P48377 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rfx1P48377 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rfx1P48377 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rfx1P48377 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rfx1P48377 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rfx1P48377 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rfx1P48377 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC19.35■□□□□ 0.69
Rfx1P48377 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rfx1P48377 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Rfx1P48377 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC19.35■□□□□ 0.69
Rfx1P48377 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rfx1P48377 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Rfx1P48377 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rfx1P48377 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Rfx1P48377 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rfx1P48377 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rfx1P48377 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
Rfx1P48377 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rfx1P48377 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Rfx1P48377 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rfx1P48377 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC19.35■□□□□ 0.69
Rfx1P48377 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rfx1P48377 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rfx1P48377 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rfx1P48377 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rfx1P48377 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Rfx1P48377 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Rfx1P48377 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Rfx1P48377 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rfx1P48377 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
Rfx1P48377 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rfx1P48377 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rfx1P48377 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rfx1P48377 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Rfx1P48377 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rfx1P48377 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Rfx1P48377 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Rfx1P48377 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rfx1P48377 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rfx1P48377 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC19.34■□□□□ 0.69
Rfx1P48377 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC19.34■□□□□ 0.69
Rfx1P48377 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Rfx1P48377 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rfx1P48377 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rfx1P48377 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rfx1P48377 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Rfx1P48377 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Rfx1P48377 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Rfx1P48377 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Rfx1P48377 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Rfx1P48377 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC19.33■□□□□ 0.68
Rfx1P48377 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC19.33■□□□□ 0.68
Rfx1P48377 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC19.33■□□□□ 0.68
Rfx1P48377 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Rfx1P48377 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC19.33■□□□□ 0.68
Rfx1P48377 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC19.33■□□□□ 0.68
Rfx1P48377 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Rfx1P48377 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Rfx1P48377 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rfx1P48377 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rfx1P48377 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Rfx1P48377 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Rfx1P48377 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Rfx1P48377 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rfx1P48377 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rfx1P48377 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rfx1P48377 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rfx1P48377 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rfx1P48377 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rfx1P48377 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC19.32■□□□□ 0.68
Rfx1P48377 Gm13186-201ENSMUST00000118031 316 ntBASIC19.32■□□□□ 0.68
Rfx1P48377 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Rfx1P48377 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Rfx1P48377 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Rfx1P48377 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms