Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
Traf1P39428 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Traf1P39428 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Traf1P39428 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Traf1P39428 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Traf1P39428 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Traf1P39428 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Traf1P39428 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Traf1P39428 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Traf1P39428 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Traf1P39428 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Traf1P39428 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Traf1P39428 Gm42918-201ENSMUST00000199249 1580 ntBASIC18.65■□□□□ 0.58
Traf1P39428 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Traf1P39428 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC18.65■□□□□ 0.58
Traf1P39428 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Traf1P39428 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC18.65■□□□□ 0.58
Traf1P39428 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Traf1P39428 Gm18733-201ENSMUST00000173950 856 ntBASIC18.65■□□□□ 0.58
Traf1P39428 Gm7507-201ENSMUST00000183053 1008 ntBASIC18.65■□□□□ 0.58
Traf1P39428 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC18.65■□□□□ 0.58
Traf1P39428 AC160338.1-201ENSMUST00000214232 705 ntBASIC18.65■□□□□ 0.58
Traf1P39428 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC18.65■□□□□ 0.58
Traf1P39428 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC18.65■□□□□ 0.58
Traf1P39428 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Traf1P39428 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC18.65■□□□□ 0.58
Traf1P39428 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Traf1P39428 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Traf1P39428 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Traf1P39428 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Traf1P39428 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC18.65■□□□□ 0.58
Traf1P39428 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Traf1P39428 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
Traf1P39428 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Traf1P39428 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Traf1P39428 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Traf1P39428 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Traf1P39428 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Traf1P39428 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Traf1P39428 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
Traf1P39428 Gm6376-201ENSMUST00000209407 580 ntBASIC18.64■□□□□ 0.57
Traf1P39428 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Traf1P39428 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Traf1P39428 Gm26917-202ENSMUST00000192833 3329 ntBASIC18.64■□□□□ 0.57
Traf1P39428 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Traf1P39428 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Traf1P39428 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Traf1P39428 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Traf1P39428 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Traf1P39428 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Traf1P39428 Rbfox2-207ENSMUST00000227533 1041 ntBASIC18.63■□□□□ 0.57
Traf1P39428 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Traf1P39428 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Traf1P39428 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Traf1P39428 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Traf1P39428 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Traf1P39428 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Traf1P39428 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Traf1P39428 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC18.63■□□□□ 0.57
Traf1P39428 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Traf1P39428 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Traf1P39428 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Traf1P39428 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Traf1P39428 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Traf1P39428 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Traf1P39428 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Traf1P39428 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Traf1P39428 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Traf1P39428 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC18.62■□□□□ 0.57
Traf1P39428 Gm25745-201ENSMUST00000174945 133 ntBASIC18.62■□□□□ 0.57
Traf1P39428 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Traf1P39428 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Traf1P39428 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Traf1P39428 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Traf1P39428 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Traf1P39428 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Traf1P39428 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Traf1P39428 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Traf1P39428 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Traf1P39428 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Traf1P39428 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Traf1P39428 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Traf1P39428 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Traf1P39428 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Traf1P39428 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC18.62■□□□□ 0.57
Traf1P39428 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC18.61■□□□□ 0.57
Traf1P39428 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Traf1P39428 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Traf1P39428 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Traf1P39428 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Traf1P39428 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Traf1P39428 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Traf1P39428 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Traf1P39428 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Traf1P39428 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Traf1P39428 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
Traf1P39428 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC18.61■□□□□ 0.57
Traf1P39428 Gm6443-201ENSMUST00000203599 874 ntBASIC18.61■□□□□ 0.57
Traf1P39428 Gm9449-201ENSMUST00000207265 1011 ntBASIC18.61■□□□□ 0.57
Traf1P39428 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC18.61■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 11.5 ms