Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Gm38327-201ENSMUST00000195852 1755 ntBASIC17.79■□□□□ 0.44
Msh3P13705 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
Msh3P13705 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh3P13705 Gm26917-202ENSMUST00000192833 3329 ntBASIC17.78■□□□□ 0.44
Msh3P13705 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh3P13705 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh3P13705 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Msh3P13705 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh3P13705 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh3P13705 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh3P13705 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh3P13705 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh3P13705 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC17.78■□□□□ 0.44
Msh3P13705 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh3P13705 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh3P13705 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh3P13705 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Msh3P13705 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh3P13705 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Msh3P13705 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh3P13705 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh3P13705 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh3P13705 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Msh3P13705 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Msh3P13705 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh3P13705 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh3P13705 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh3P13705 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Msh3P13705 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh3P13705 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh3P13705 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh3P13705 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh3P13705 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh3P13705 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh3P13705 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh3P13705 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC17.77■□□□□ 0.44
Msh3P13705 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Msh3P13705 Mir3081-201ENSMUST00000175305 84 ntBASIC17.77■□□□□ 0.44
Msh3P13705 Gm33142-201ENSMUST00000193913 867 ntBASIC17.77■□□□□ 0.44
Msh3P13705 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh3P13705 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh3P13705 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Msh3P13705 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh3P13705 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh3P13705 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh3P13705 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Msh3P13705 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Msh3P13705 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Msh3P13705 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Msh3P13705 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Msh3P13705 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Msh3P13705 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Msh3P13705 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh3P13705 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh3P13705 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Msh3P13705 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Msh3P13705 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh3P13705 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Msh3P13705 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh3P13705 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC17.76■□□□□ 0.43
Msh3P13705 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Msh3P13705 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Msh3P13705 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh3P13705 Gm27704-201ENSMUST00000185094 107 ntBASIC17.76■□□□□ 0.43
Msh3P13705 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC17.76■□□□□ 0.43
Msh3P13705 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh3P13705 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh3P13705 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh3P13705 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC17.76■□□□□ 0.43
Msh3P13705 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh3P13705 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh3P13705 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Msh3P13705 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh3P13705 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Msh3P13705 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh3P13705 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msh3P13705 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msh3P13705 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msh3P13705 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msh3P13705 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msh3P13705 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Msh3P13705 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msh3P13705 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msh3P13705 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
Msh3P13705 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msh3P13705 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Msh3P13705 Gm1818-201ENSMUST00000169406 1184 ntBASIC17.75■□□□□ 0.43
Msh3P13705 Gm27357-201ENSMUST00000183754 135 ntBASIC17.75■□□□□ 0.43
Msh3P13705 Gm7977-201ENSMUST00000193787 748 ntBASIC17.75■□□□□ 0.43
Msh3P13705 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Msh3P13705 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msh3P13705 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC17.75■□□□□ 0.43
Msh3P13705 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Msh3P13705 AC153526.5-201ENSMUST00000218661 2147 ntBASIC17.75■□□□□ 0.43
Msh3P13705 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
Msh3P13705 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msh3P13705 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Msh3P13705 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msh3P13705 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Msh3P13705 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 68 ms