Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 AA543401-201ENSMUST00000164248 1269 ntBASIC18.82■□□□□ 0.6
Col1a1P11087 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC18.82■□□□□ 0.6
Col1a1P11087 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col1a1P11087 AC139382.1-201ENSMUST00000221402 498 ntBASIC18.82■□□□□ 0.6
Col1a1P11087 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col1a1P11087 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Col1a1P11087 Gm45606-201ENSMUST00000209836 2795 ntBASIC18.82■□□□□ 0.6
Col1a1P11087 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col1a1P11087 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col1a1P11087 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col1a1P11087 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col1a1P11087 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col1a1P11087 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col1a1P11087 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col1a1P11087 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col1a1P11087 Gm27321-201ENSMUST00000185021 205 ntBASIC18.81■□□□□ 0.6
Col1a1P11087 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col1a1P11087 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col1a1P11087 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col1a1P11087 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC18.81■□□□□ 0.6
Col1a1P11087 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col1a1P11087 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col1a1P11087 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC18.81■□□□□ 0.6
Col1a1P11087 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col1a1P11087 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Col1a1P11087 Gm43338-201ENSMUST00000198617 2223 ntBASIC18.8■□□□□ 0.6
Col1a1P11087 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col1a1P11087 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Col1a1P11087 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
Col1a1P11087 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC18.8■□□□□ 0.6
Col1a1P11087 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC18.8■□□□□ 0.6
Col1a1P11087 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC18.8■□□□□ 0.6
Col1a1P11087 Gm5177-201ENSMUST00000183092 997 ntBASIC18.8■□□□□ 0.6
Col1a1P11087 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Col1a1P11087 Mir7036b-201ENSMUST00000184791 63 ntBASIC18.8■□□□□ 0.6
Col1a1P11087 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC18.8■□□□□ 0.6
Col1a1P11087 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col1a1P11087 Gm5186-201ENSMUST00000218781 920 ntBASIC18.8■□□□□ 0.6
Col1a1P11087 AC155252.2-201ENSMUST00000226946 680 ntBASIC18.8■□□□□ 0.6
Col1a1P11087 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col1a1P11087 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col1a1P11087 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col1a1P11087 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col1a1P11087 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC18.8■□□□□ 0.6
Col1a1P11087 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col1a1P11087 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col1a1P11087 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col1a1P11087 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col1a1P11087 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col1a1P11087 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col1a1P11087 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col1a1P11087 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col1a1P11087 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC18.79■□□□□ 0.6
Col1a1P11087 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col1a1P11087 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col1a1P11087 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC18.79■□□□□ 0.6
Col1a1P11087 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col1a1P11087 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col1a1P11087 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col1a1P11087 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col1a1P11087 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col1a1P11087 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col1a1P11087 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col1a1P11087 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col1a1P11087 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC18.78■□□□□ 0.6
Col1a1P11087 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col1a1P11087 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Col1a1P11087 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col1a1P11087 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC18.78■□□□□ 0.6
Col1a1P11087 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col1a1P11087 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC18.78■□□□□ 0.6
Col1a1P11087 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC18.78■□□□□ 0.6
Col1a1P11087 Gm45747-201ENSMUST00000212203 999 ntBASIC18.78■□□□□ 0.6
Col1a1P11087 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col1a1P11087 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col1a1P11087 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col1a1P11087 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col1a1P11087 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col1a1P11087 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col1a1P11087 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col1a1P11087 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col1a1P11087 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col1a1P11087 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC18.78■□□□□ 0.6
Col1a1P11087 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col1a1P11087 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col1a1P11087 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col1a1P11087 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col1a1P11087 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col1a1P11087 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col1a1P11087 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col1a1P11087 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC18.77■□□□□ 0.6
Col1a1P11087 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col1a1P11087 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Col1a1P11087 AC151836.1-202ENSMUST00000226259 753 ntBASIC18.77■□□□□ 0.6
Col1a1P11087 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col1a1P11087 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC18.77■□□□□ 0.6
Col1a1P11087 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col1a1P11087 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col1a1P11087 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col1a1P11087 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 61 ms