Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Chmp6P0C0A3 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Chmp6P0C0A3 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC17.61■□□□□ 0.41
Chmp6P0C0A3 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Chmp6P0C0A3 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC17.61■□□□□ 0.41
Chmp6P0C0A3 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Chmp6P0C0A3 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
Chmp6P0C0A3 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Chmp6P0C0A3 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Chmp6P0C0A3 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Chmp6P0C0A3 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Chmp6P0C0A3 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Chmp6P0C0A3 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Chmp6P0C0A3 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC17.61■□□□□ 0.41
Chmp6P0C0A3 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Chmp6P0C0A3 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Chmp6P0C0A3 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Chmp6P0C0A3 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Gm7284-201ENSMUST00000131667 944 ntBASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chmp6P0C0A3 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Chmp6P0C0A3 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Chmp6P0C0A3 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Chmp6P0C0A3 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Chmp6P0C0A3 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Chmp6P0C0A3 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC17.59■□□□□ 0.41
Chmp6P0C0A3 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
Chmp6P0C0A3 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
Chmp6P0C0A3 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Chmp6P0C0A3 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC17.59■□□□□ 0.41
Chmp6P0C0A3 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC17.59■□□□□ 0.41
Chmp6P0C0A3 Gm21362-201ENSMUST00000194272 928 ntBASIC17.59■□□□□ 0.41
Chmp6P0C0A3 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Chmp6P0C0A3 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Chmp6P0C0A3 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Chmp6P0C0A3 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Chmp6P0C0A3 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC17.59■□□□□ 0.41
Chmp6P0C0A3 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Chmp6P0C0A3 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Chmp6P0C0A3 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Chmp6P0C0A3 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Chmp6P0C0A3 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
Chmp6P0C0A3 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Chmp6P0C0A3 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Chmp6P0C0A3 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Chmp6P0C0A3 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
Chmp6P0C0A3 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Chmp6P0C0A3 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Chmp6P0C0A3 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Chmp6P0C0A3 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Chmp6P0C0A3 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC17.58■□□□□ 0.4
Chmp6P0C0A3 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Chmp6P0C0A3 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Chmp6P0C0A3 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Chmp6P0C0A3 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Chmp6P0C0A3 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Chmp6P0C0A3 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Chmp6P0C0A3 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC17.58■□□□□ 0.4
Chmp6P0C0A3 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Chmp6P0C0A3 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Chmp6P0C0A3 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Chmp6P0C0A3 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Chmp6P0C0A3 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Chmp6P0C0A3 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Chmp6P0C0A3 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chmp6P0C0A3 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chmp6P0C0A3 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
Chmp6P0C0A3 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms