Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Lmx1bO88609 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Lmx1bO88609 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Lmx1bO88609 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Lmx1bO88609 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Lmx1bO88609 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Lmx1bO88609 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Lmx1bO88609 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Lmx1bO88609 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lmx1bO88609 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lmx1bO88609 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lmx1bO88609 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lmx1bO88609 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lmx1bO88609 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lmx1bO88609 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Lmx1bO88609 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Lmx1bO88609 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lmx1bO88609 Gm11452-201ENSMUST00000122376 690 ntBASIC14.63□□□□□ -0.07
Lmx1bO88609 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lmx1bO88609 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lmx1bO88609 Gm44430-201ENSMUST00000203376 995 ntBASIC14.63□□□□□ -0.07
Lmx1bO88609 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Lmx1bO88609 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC14.63□□□□□ -0.07
Lmx1bO88609 Cmtm5-203ENSMUST00000227441 610 ntBASIC14.63□□□□□ -0.07
Lmx1bO88609 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC14.63□□□□□ -0.07
Lmx1bO88609 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC14.63□□□□□ -0.07
Lmx1bO88609 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lmx1bO88609 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lmx1bO88609 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lmx1bO88609 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lmx1bO88609 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lmx1bO88609 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lmx1bO88609 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Lmx1bO88609 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
Lmx1bO88609 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Lmx1bO88609 Slc35b2-202ENSMUST00000223987 1766 ntBASIC14.62□□□□□ -0.07
Lmx1bO88609 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lmx1bO88609 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Lmx1bO88609 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lmx1bO88609 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lmx1bO88609 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lmx1bO88609 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lmx1bO88609 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Lmx1bO88609 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lmx1bO88609 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC14.62□□□□□ -0.07
Lmx1bO88609 Gm13312-201ENSMUST00000119631 718 ntBASIC14.62□□□□□ -0.07
Lmx1bO88609 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC14.62□□□□□ -0.07
Lmx1bO88609 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Lmx1bO88609 Gm27867-201ENSMUST00000184778 125 ntBASIC14.62□□□□□ -0.07
Lmx1bO88609 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC14.62□□□□□ -0.07
Lmx1bO88609 Gm28659-201ENSMUST00000188013 759 ntBASIC14.62□□□□□ -0.07
Lmx1bO88609 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC14.62□□□□□ -0.07
Lmx1bO88609 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lmx1bO88609 AC108846.1-201ENSMUST00000214531 513 ntBASIC14.62□□□□□ -0.07
Lmx1bO88609 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lmx1bO88609 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lmx1bO88609 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lmx1bO88609 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lmx1bO88609 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Lmx1bO88609 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lmx1bO88609 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Lmx1bO88609 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lmx1bO88609 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lmx1bO88609 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lmx1bO88609 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Lmx1bO88609 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC14.61□□□□□ -0.07
Lmx1bO88609 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Lmx1bO88609 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lmx1bO88609 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Lmx1bO88609 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lmx1bO88609 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lmx1bO88609 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC14.61□□□□□ -0.07
Lmx1bO88609 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lmx1bO88609 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lmx1bO88609 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lmx1bO88609 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Lmx1bO88609 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lmx1bO88609 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
Lmx1bO88609 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
Lmx1bO88609 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC14.61□□□□□ -0.07
Lmx1bO88609 Gm12644-201ENSMUST00000119935 606 ntBASIC14.61□□□□□ -0.07
Lmx1bO88609 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC14.61□□□□□ -0.07
Lmx1bO88609 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Lmx1bO88609 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Lmx1bO88609 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lmx1bO88609 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lmx1bO88609 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lmx1bO88609 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC14.61□□□□□ -0.07
Lmx1bO88609 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Lmx1bO88609 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Lmx1bO88609 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lmx1bO88609 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lmx1bO88609 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC14.61□□□□□ -0.07
Lmx1bO88609 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lmx1bO88609 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lmx1bO88609 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Lmx1bO88609 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Lmx1bO88609 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Lmx1bO88609 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Lmx1bO88609 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms