Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 HIGD1AP2-201ENST00000446367 280 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 AL109933.2-201ENST00000452651 260 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 CACYBPP2-201ENST00000453625 678 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 SNORD109B-201ENST00000458961 67 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 SNORD109A-201ENST00000459128 67 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 snoU109.2-201ENST00000459316 135 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.32□□□□□ -2.04
DDX28Q9NUL7 AC104136.1-201ENST00000512969 394 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 RNA5SP503-201ENST00000517047 117 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 AP002963.1-201ENST00000530590 184 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.32□□□□□ -2.04
DDX28Q9NUL7 MIR5571-201ENST00000577998 113 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 AC009509.4-201ENST00000619202 509 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 AC024581.2-201ENST00000619986 252 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 AC012640.5-201ENST00000623897 319 ntBASIC2.32□□□□□ -2.04
DDX28Q9NUL7 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.32□□□□□ -2.04
DDX28Q9NUL7 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.32□□□□□ -2.04
DDX28Q9NUL7 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
DDX28Q9NUL7 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.31□□□□□ -2.04
DDX28Q9NUL7 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
DDX28Q9NUL7 RNU6-942P-201ENST00000363002 107 ntBASIC2.31□□□□□ -2.04
DDX28Q9NUL7 RNU6-384P-201ENST00000364900 104 ntBASIC2.31□□□□□ -2.04
DDX28Q9NUL7 RNU6-606P-201ENST00000384721 111 ntBASIC2.31□□□□□ -2.04
DDX28Q9NUL7 AL360182.1-201ENST00000397433 468 ntBASIC2.31□□□□□ -2.04
DDX28Q9NUL7 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.31□□□□□ -2.04
DDX28Q9NUL7 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC2.31□□□□□ -2.04
DDX28Q9NUL7 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.31□□□□□ -2.04
DDX28Q9NUL7 AC011005.2-201ENST00000487324 359 ntBASIC2.31□□□□□ -2.04
DDX28Q9NUL7 AC018437.1-201ENST00000492214 406 ntBASIC2.31□□□□□ -2.04
DDX28Q9NUL7 AC079140.3-201ENST00000511111 550 ntBASIC2.31□□□□□ -2.04
DDX28Q9NUL7 RN7SKP298-201ENST00000515950 94 ntBASIC2.31□□□□□ -2.04
DDX28Q9NUL7 RNA5SP282-201ENST00000516355 108 ntBASIC2.31□□□□□ -2.04
DDX28Q9NUL7 AP004607.1-201ENST00000524456 203 ntBASIC2.31□□□□□ -2.04
DDX28Q9NUL7 AP002770.2-201ENST00000543613 532 ntBASIC2.31□□□□□ -2.04
DDX28Q9NUL7 AC079598.5-201ENST00000547460 117 ntBASIC2.31□□□□□ -2.04
DDX28Q9NUL7 SUB1P2-201ENST00000556401 297 ntBASIC2.31□□□□□ -2.04
DDX28Q9NUL7 RPS3AP23-202ENST00000574601 686 ntBASIC2.31□□□□□ -2.04
DDX28Q9NUL7 RSL24D1P11-201ENST00000591045 491 ntBASIC2.31□□□□□ -2.04
DDX28Q9NUL7 AC008945.2-201ENST00000606056 604 ntBASIC2.31□□□□□ -2.04
DDX28Q9NUL7 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
DDX28Q9NUL7 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.31□□□□□ -2.04
DDX28Q9NUL7 MIR6715A-201ENST00000615929 79 ntBASIC2.31□□□□□ -2.04
DDX28Q9NUL7 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.31□□□□□ -2.04
DDX28Q9NUL7 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.31□□□□□ -2.04
DDX28Q9NUL7 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
DDX28Q9NUL7 Z75746.1-201ENST00000440243 2080 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
DDX28Q9NUL7 RNU6-858P-201ENST00000362436 107 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 RNU6-1120P-201ENST00000362988 108 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 RNU6-1029P-201ENST00000384109 107 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.3□□□□□ -2.04
DDX28Q9NUL7 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC2.3□□□□□ -2.04
DDX28Q9NUL7 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.3□□□□□ -2.04
DDX28Q9NUL7 ARL5AP4-201ENST00000430731 512 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 AC000111.3-201ENST00000433478 193 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 AC011816.1-201ENST00000441346 546 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 Z83846.1-201ENST00000446798 265 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.3□□□□□ -2.04
DDX28Q9NUL7 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.3□□□□□ -2.04
DDX28Q9NUL7 AL162395.1-201ENST00000457882 422 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.3□□□□□ -2.04
DDX28Q9NUL7 RPL7P43-201ENST00000478876 753 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 AC107222.1-201ENST00000510899 637 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 AC010493.1-201ENST00000513479 292 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 MIR892C-201ENST00000516410 77 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 AC087241.2-201ENST00000535801 324 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 AC135279.1-201ENST00000543493 504 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 CR383656.8-201ENST00000549046 145 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.3□□□□□ -2.04
DDX28Q9NUL7 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.3□□□□□ -2.04
DDX28Q9NUL7 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.3□□□□□ -2.04
DDX28Q9NUL7 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.3□□□□□ -2.04
DDX28Q9NUL7 MIR3945-201ENST00000581853 98 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 AC105245.1-201ENST00000581934 244 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 MIR5092-201ENST00000583139 88 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 PIGPP4-201ENST00000584447 307 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 AC073648.5-201ENST00000603502 305 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 MIR6840-201ENST00000611937 71 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.3□□□□□ -2.04
DDX28Q9NUL7 AC092608.2-201ENST00000624427 218 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 SCARNA4-202ENST00000625402 129 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 MIR203B-201ENST00000636080 86 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 MIR3529-201ENST00000637713 78 ntBASIC2.3□□□□□ -2.04
DDX28Q9NUL7 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
DDX28Q9NUL7 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.29□□□□□ -2.04
DDX28Q9NUL7 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
DDX28Q9NUL7 RNU6-859P-201ENST00000362728 107 ntBASIC2.29□□□□□ -2.04
DDX28Q9NUL7 SNORA6-201ENST00000384033 151 ntBASIC2.29□□□□□ -2.04
DDX28Q9NUL7 AL356057.3-201ENST00000402607 340 ntBASIC2.29□□□□□ -2.04
DDX28Q9NUL7 RNU4-46P-201ENST00000410818 138 ntBASIC2.29□□□□□ -2.04
DDX28Q9NUL7 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.29□□□□□ -2.04
DDX28Q9NUL7 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.29□□□□□ -2.04
DDX28Q9NUL7 RPS3AP44-201ENST00000425466 790 ntBASIC2.29□□□□□ -2.04
DDX28Q9NUL7 IPO7P1-201ENST00000442031 636 ntBASIC2.29□□□□□ -2.04
DDX28Q9NUL7 MTND1P18-201ENST00000448191 573 ntBASIC2.29□□□□□ -2.04
DDX28Q9NUL7 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.29□□□□□ -2.04
DDX28Q9NUL7 RPS29P15-201ENST00000458329 171 ntBASIC2.29□□□□□ -2.04
DDX28Q9NUL7 GMFBP1-201ENST00000467831 427 ntBASIC2.29□□□□□ -2.04
DDX28Q9NUL7 MED28P2-201ENST00000475771 317 ntBASIC2.29□□□□□ -2.04
DDX28Q9NUL7 TRBV12-1-201ENST00000479785 344 ntBASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms