Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 HMGB1P17-201ENST00000403495 628 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 AL449283.1-202ENST00000418249 604 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 AL714022.1-201ENST00000439897 151 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 MTCYBP11-201ENST00000447254 1109 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.39□□□□□ -2.35
CHD9Q3L8U1 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC0.39□□□□□ -2.35
CHD9Q3L8U1 AC087477.1-201ENST00000465747 340 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 AC116337.2-201ENST00000477662 156 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 IGLVI-20-201ENST00000519296 130 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.39□□□□□ -2.35
CHD9Q3L8U1 IGJP1-201ENST00000522682 475 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 AC124947.2-202ENST00000552735 133 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 MIR4422-201ENST00000581938 83 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 Z99571.1-201ENST00000636677 394 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 RNA5SP368-201ENST00000364298 116 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 AL356776.1-201ENST00000406574 447 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 OR9R1P-201ENST00000412200 877 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC0.39□□□□□ -2.35
CHD9Q3L8U1 HSPE1P21-201ENST00000438283 308 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 UBL5P1-201ENST00000507979 193 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 AC019288.1-201ENST00000557918 224 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 AC069294.1-201ENST00000608397 350 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 AL355472.4-201ENST00000610233 626 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 AL603758.1-201ENST00000618654 241 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 AC006001.4-201ENST00000622243 395 ntBASIC0.39□□□□□ -2.35
CHD9Q3L8U1 AC092125.1-201ENST00000562568 1995 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 SNORA8.3-201ENST00000384679 139 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 RNU11-3P-201ENST00000391111 133 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 AL031577.2-201ENST00000404133 280 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 AL356131.1-201ENST00000405826 414 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 TRIM60P5Y-201ENST00000413946 574 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 TAF13P2-201ENST00000416876 286 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC0.38□□□□□ -2.35
CHD9Q3L8U1 NDUFA5P7-201ENST00000452914 242 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 AL049714.1-201ENST00000466686 347 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 AC084024.2-201ENST00000503480 791 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 RNA5SP137-201ENST00000516833 135 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 AC136628.3-201ENST00000521868 290 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC0.38□□□□□ -2.35
CHD9Q3L8U1 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC0.38□□□□□ -2.35
CHD9Q3L8U1 CYCSP27-201ENST00000527643 293 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 U4atac.1-201ENST00000618345 95 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 AC090617.9-201ENST00000623751 147 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC0.38□□□□□ -2.35
CHD9Q3L8U1 UBE2Q2P1-202ENST00000354771 883 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 Y_RNA.67-201ENST00000362870 100 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 RNU6-112P-201ENST00000363599 104 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 RNU6-1187P-201ENST00000364771 110 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 AL158823.1-201ENST00000418441 478 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC0.38□□□□□ -2.35
CHD9Q3L8U1 MRPL35P3-201ENST00000421557 364 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 AC004865.1-201ENST00000442276 1003 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 AL592447.1-201ENST00000447592 540 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 AC114982.1-201ENST00000469402 321 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC0.38□□□□□ -2.35
CHD9Q3L8U1 MTCYBP16-201ENST00000509187 1129 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC0.38□□□□□ -2.35
CHD9Q3L8U1 SNORA25.11-201ENST00000515935 105 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.38□□□□□ -2.35
CHD9Q3L8U1 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC0.38□□□□□ -2.35
CHD9Q3L8U1 AC136932.1-201ENST00000574771 208 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 BNIP3P25-201ENST00000596023 559 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 BNIP3P23-201ENST00000599655 511 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 RPL21P136-201ENST00000605378 396 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 PRR13P7-201ENST00000605538 430 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 AL021879.1-201ENST00000611756 288 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 uc_338.14-201ENST00000613162 166 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 AC073569.3-201ENST00000619055 682 ntBASIC0.38□□□□□ -2.35
CHD9Q3L8U1 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC0.37□□□□□ -2.35
CHD9Q3L8U1 AC245060.5-201ENST00000610778 3293 ntBASIC0.37□□□□□ -2.35
CHD9Q3L8U1 U8.14-201ENST00000390843 143 ntBASIC0.37□□□□□ -2.35
CHD9Q3L8U1 MIR1207-201ENST00000408249 87 ntBASIC0.37□□□□□ -2.35
CHD9Q3L8U1 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC0.37□□□□□ -2.35
CHD9Q3L8U1 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC0.37□□□□□ -2.35
CHD9Q3L8U1 AL606489.2-201ENST00000433886 234 ntBASIC0.37□□□□□ -2.35
CHD9Q3L8U1 FABP5P14-201ENST00000437273 393 ntBASIC0.37□□□□□ -2.35
CHD9Q3L8U1 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC0.37□□□□□ -2.35
CHD9Q3L8U1 DYNLT3P2-201ENST00000442517 295 ntBASIC0.37□□□□□ -2.35
CHD9Q3L8U1 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC0.37□□□□□ -2.35
CHD9Q3L8U1 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC0.37□□□□□ -2.35
CHD9Q3L8U1 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC0.37□□□□□ -2.35
CHD9Q3L8U1 Y_RNA.700-201ENST00000516806 100 ntBASIC0.37□□□□□ -2.35
CHD9Q3L8U1 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC0.37□□□□□ -2.35
CHD9Q3L8U1 AC024257.5-201ENST00000612739 531 ntBASIC0.37□□□□□ -2.35
CHD9Q3L8U1 AL357075.2-201ENST00000614906 189 ntBASIC0.37□□□□□ -2.35
CHD9Q3L8U1 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC0.37□□□□□ -2.35
CHD9Q3L8U1 AP003476.1-201ENST00000623984 516 ntBASIC0.37□□□□□ -2.35
CHD9Q3L8U1 AL138713.1-201ENST00000624026 2130 ntBASIC0.37□□□□□ -2.35
CHD9Q3L8U1 MTND2P41-201ENST00000637599 773 ntBASIC0.37□□□□□ -2.35
CHD9Q3L8U1 SNORA4.1-201ENST00000364263 144 ntBASIC0.37□□□□□ -2.35
CHD9Q3L8U1 RNU6-619P-201ENST00000365146 108 ntBASIC0.37□□□□□ -2.35
CHD9Q3L8U1 PNRC2P1-201ENST00000423940 420 ntBASIC0.37□□□□□ -2.35
CHD9Q3L8U1 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC0.37□□□□□ -2.35
CHD9Q3L8U1 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.37□□□□□ -2.35
CHD9Q3L8U1 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC0.37□□□□□ -2.35
CHD9Q3L8U1 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.37□□□□□ -2.35
CHD9Q3L8U1 AL671309.1-201ENST00000603750 544 ntBASIC0.37□□□□□ -2.35
CHD9Q3L8U1 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC0.36□□□□□ -2.35
CHD9Q3L8U1 ZNF29P-201ENST00000225587 168 ntBASIC0.36□□□□□ -2.35
CHD9Q3L8U1 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC0.36□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms