Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 MIR3941-201ENST00000582572 103 ntBASIC3.02□□□□□ -1.93
SHMT1P34896 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.02□□□□□ -1.93
SHMT1P34896 AC007938.3-201ENST00000604965 623 ntBASIC3.02□□□□□ -1.93
SHMT1P34896 AL627309.6-201ENST00000606857 840 ntBASIC3.02□□□□□ -1.93
SHMT1P34896 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.02□□□□□ -1.93
SHMT1P34896 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.02□□□□□ -1.93
SHMT1P34896 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
SHMT1P34896 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
SHMT1P34896 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.01□□□□□ -1.93
SHMT1P34896 RNU6-778P-201ENST00000363269 103 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 RNU6-82P-201ENST00000363970 107 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 Y_RNA.231-201ENST00000364358 102 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 Y_RNA.399-201ENST00000383955 105 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 RNU6-198P-201ENST00000384258 104 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 RNU6-1179P-201ENST00000384667 107 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 MIR514A2-201ENST00000385131 88 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 MIR514A3-201ENST00000385132 88 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 RNA5SP252-201ENST00000391131 119 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.01□□□□□ -1.93
SHMT1P34896 AC098614.2-201ENST00000426040 255 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 HMGB1P9-201ENST00000429856 646 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 AC244505.4-201ENST00000434905 287 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 SSXP5-201ENST00000443473 287 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 MRPL50P4-201ENST00000446432 475 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 AL360271.2-201ENST00000447710 161 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 RPL26P9-201ENST00000457466 433 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 AC104472.2-201ENST00000469035 601 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 AC079140.5-201ENST00000507882 310 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.01□□□□□ -1.93
SHMT1P34896 AC112206.3-201ENST00000514578 389 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 RN7SKP24-201ENST00000515888 284 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 SNORA31.19-201ENST00000517079 126 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.01□□□□□ -1.93
SHMT1P34896 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.01□□□□□ -1.93
SHMT1P34896 AL133241.1-201ENST00000556832 487 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 AL391261.3-201ENST00000557194 520 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 MTCO3P23-201ENST00000561363 289 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 MIR4435-1-201ENST00000582552 80 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC3.01□□□□□ -1.93
SHMT1P34896 RMST_3.1-201ENST00000611651 109 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
SHMT1P34896 U6.99-201ENST00000637524 83 ntBASIC3.01□□□□□ -1.93
SHMT1P34896 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
SHMT1P34896 AC010680.1-201ENST00000590024 3590 ntBASIC3□□□□□ -1.93
SHMT1P34896 AC004944.1-201ENST00000517807 3059 ntBASIC3□□□□□ -1.93
SHMT1P34896 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3□□□□□ -1.93
SHMT1P34896 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
SHMT1P34896 RNA5SP289-201ENST00000362332 137 ntBASIC3□□□□□ -1.93
SHMT1P34896 RNU4-20P-201ENST00000365601 151 ntBASIC3□□□□□ -1.93
SHMT1P34896 SNORA16.2-201ENST00000390991 127 ntBASIC3□□□□□ -1.93
SHMT1P34896 SNORA40C-201ENST00000391285 128 ntBASIC3□□□□□ -1.93
SHMT1P34896 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3□□□□□ -1.93
SHMT1P34896 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC3□□□□□ -1.93
SHMT1P34896 AL353729.1-201ENST00000425044 720 ntBASIC3□□□□□ -1.93
SHMT1P34896 SRIP2-201ENST00000428470 166 ntBASIC3□□□□□ -1.93
SHMT1P34896 ERLEC1P1-201ENST00000433806 578 ntBASIC3□□□□□ -1.93
SHMT1P34896 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3□□□□□ -1.93
SHMT1P34896 AL714022.1-201ENST00000439897 151 ntBASIC3□□□□□ -1.93
SHMT1P34896 RPL32P28-201ENST00000443577 397 ntBASIC3□□□□□ -1.93
SHMT1P34896 NDUFB1P2-201ENST00000449477 176 ntBASIC3□□□□□ -1.93
SHMT1P34896 PRDX4P1-201ENST00000507189 574 ntBASIC3□□□□□ -1.93
SHMT1P34896 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC3□□□□□ -1.93
SHMT1P34896 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3□□□□□ -1.93
SHMT1P34896 RNU6-358P-201ENST00000516564 75 ntBASIC3□□□□□ -1.93
SHMT1P34896 RNU6-572P-201ENST00000516724 80 ntBASIC3□□□□□ -1.93
SHMT1P34896 MTCO3P24-201ENST00000572729 782 ntBASIC3□□□□□ -1.93
SHMT1P34896 MIR5583-1-201ENST00000580941 59 ntBASIC3□□□□□ -1.93
SHMT1P34896 AC012119.1-201ENST00000603184 222 ntBASIC3□□□□□ -1.93
SHMT1P34896 RNU6-89P-201ENST00000606519 100 ntBASIC3□□□□□ -1.93
SHMT1P34896 Z82243.1-201ENST00000609432 473 ntBASIC3□□□□□ -1.93
SHMT1P34896 U2.17-201ENST00000611454 95 ntBASIC3□□□□□ -1.93
SHMT1P34896 AL161629.2-201ENST00000615347 275 ntBASIC3□□□□□ -1.93
SHMT1P34896 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC3□□□□□ -1.93
SHMT1P34896 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3□□□□□ -1.93
SHMT1P34896 AC022418.1-201ENST00000624118 445 ntBASIC3□□□□□ -1.93
SHMT1P34896 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC3□□□□□ -1.93
SHMT1P34896 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3□□□□□ -1.93
SHMT1P34896 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
SHMT1P34896 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3□□□□□ -1.93
SHMT1P34896 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
SHMT1P34896 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
SHMT1P34896 Y_RNA.157-201ENST00000363638 102 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 SNORA14A-201ENST00000364773 135 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 SNORA51.4-201ENST00000364993 124 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 BMS1P22-201ENST00000414726 313 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.99□□□□□ -1.93
SHMT1P34896 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.99□□□□□ -1.93
SHMT1P34896 AL353621.1-201ENST00000418219 243 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 SKA2P1-201ENST00000425592 390 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
SHMT1P34896 AC007560.1-201ENST00000426912 237 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.99□□□□□ -1.93
SHMT1P34896 AL121601.2-201ENST00000438019 707 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 MTCO3P18-201ENST00000440206 761 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 AL078601.1-201ENST00000444542 271 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 PRPS1P1-201ENST00000445305 876 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC2.99□□□□□ -1.93
SHMT1P34896 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
SHMT1P34896 AL031183.1-201ENST00000457667 207 ntBASIC2.99□□□□□ -1.93
SHMT1P34896 RNU7-23P-201ENST00000459465 62 ntBASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms