Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.5□□□□□ -2.01
NKX3-1Q99801 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.5□□□□□ -2.01
NKX3-1Q99801 MIR10A-201ENST00000385043 110 ntBASIC2.5□□□□□ -2.01
NKX3-1Q99801 RNA5SP219-201ENST00000390940 113 ntBASIC2.5□□□□□ -2.01
NKX3-1Q99801 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.5□□□□□ -2.01
NKX3-1Q99801 AC104332.2-201ENST00000429959 156 ntBASIC2.5□□□□□ -2.01
NKX3-1Q99801 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.5□□□□□ -2.01
NKX3-1Q99801 MRPS10P2-201ENST00000431226 381 ntBASIC2.5□□□□□ -2.01
NKX3-1Q99801 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.5□□□□□ -2.01
NKX3-1Q99801 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.5□□□□□ -2.01
NKX3-1Q99801 AC233279.1-201ENST00000455300 423 ntBASIC2.5□□□□□ -2.01
NKX3-1Q99801 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.5□□□□□ -2.01
NKX3-1Q99801 AC011005.2-201ENST00000487324 359 ntBASIC2.5□□□□□ -2.01
NKX3-1Q99801 RPS27P26-201ENST00000494583 239 ntBASIC2.5□□□□□ -2.01
NKX3-1Q99801 MTCYBP18-201ENST00000501056 747 ntBASIC2.5□□□□□ -2.01
NKX3-1Q99801 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.5□□□□□ -2.01
NKX3-1Q99801 AL117351.2-201ENST00000513571 157 ntBASIC2.5□□□□□ -2.01
NKX3-1Q99801 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC2.5□□□□□ -2.01
NKX3-1Q99801 MIR892C-201ENST00000516410 77 ntBASIC2.5□□□□□ -2.01
NKX3-1Q99801 CENPUP1-201ENST00000526649 1202 ntBASIC2.5□□□□□ -2.01
NKX3-1Q99801 MTCO3P23-201ENST00000561363 289 ntBASIC2.5□□□□□ -2.01
NKX3-1Q99801 RPL23AP78-201ENST00000599928 470 ntBASIC2.5□□□□□ -2.01
NKX3-1Q99801 ATP1B3P1-201ENST00000605365 821 ntBASIC2.5□□□□□ -2.01
NKX3-1Q99801 AC092807.2-201ENST00000609367 243 ntBASIC2.5□□□□□ -2.01
NKX3-1Q99801 AC135507.2-201ENST00000612443 309 ntBASIC2.5□□□□□ -2.01
NKX3-1Q99801 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.5□□□□□ -2.01
NKX3-1Q99801 AC010378.1-201ENST00000619270 362 ntBASIC2.5□□□□□ -2.01
NKX3-1Q99801 AC110491.1-201ENST00000562191 2010 ntBASIC2.5□□□□□ -2.01
NKX3-1Q99801 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
NKX3-1Q99801 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
NKX3-1Q99801 AC004520.1-201ENST00000608362 1413 ntBASIC2.5□□□□□ -2.01
NKX3-1Q99801 ZNF519P1-201ENST00000449011 1626 ntBASIC2.5□□□□□ -2.01
NKX3-1Q99801 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
NKX3-1Q99801 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.49□□□□□ -2.01
NKX3-1Q99801 Y_RNA.231-201ENST00000364358 102 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 RNU6-1283P-201ENST00000365314 105 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 Y_RNA.399-201ENST00000383955 105 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 Y_RNA.573-201ENST00000384763 105 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.49□□□□□ -2.01
NKX3-1Q99801 AL592114.1-201ENST00000403842 483 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 RPL30P16-201ENST00000419341 429 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 COTL1P1-201ENST00000422309 375 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 RPL35AP12-201ENST00000425362 338 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 MTND1P2-201ENST00000430604 821 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 AL627311.1-201ENST00000431514 115 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.49□□□□□ -2.01
NKX3-1Q99801 RPS29P12-201ENST00000460178 152 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC2.49□□□□□ -2.01
NKX3-1Q99801 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.49□□□□□ -2.01
NKX3-1Q99801 RPL23AP11-201ENST00000475260 469 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 AC083904.1-201ENST00000487828 231 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 RPL38P4-201ENST00000502376 214 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 RNU6-56P-201ENST00000516986 93 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.49□□□□□ -2.01
NKX3-1Q99801 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC2.49□□□□□ -2.01
NKX3-1Q99801 AC006199.1-201ENST00000548728 219 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 AC090115.3-201ENST00000553218 849 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.49□□□□□ -2.01
NKX3-1Q99801 LRRC37A5P-203ENST00000580181 585 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 AC011471.1-201ENST00000585766 187 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 AC020895.1-201ENST00000595362 272 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 AC019159.1-201ENST00000605094 187 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 AC005046.1-201ENST00000608515 625 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 AC011890.2-201ENST00000613393 294 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 AC110079.1-202ENST00000635213 138 ntBASIC2.49□□□□□ -2.01
NKX3-1Q99801 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.49□□□□□ -2.01
NKX3-1Q99801 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.49□□□□□ -2.01
NKX3-1Q99801 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.48□□□□□ -2.01
NKX3-1Q99801 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.48□□□□□ -2.01
NKX3-1Q99801 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
NKX3-1Q99801 Z82195.2-201ENST00000612348 18351 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.48□□□□□ -2.01
NKX3-1Q99801 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
NKX3-1Q99801 Y_RNA.373-201ENST00000365600 103 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 MIR634-201ENST00000385208 97 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
NKX3-1Q99801 U3.26-201ENST00000391236 204 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 SNORD88.1-201ENST00000408684 91 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 RNA5SP492-201ENST00000411330 114 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 POLHP1-201ENST00000411806 470 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.48□□□□□ -2.01
NKX3-1Q99801 SNRPEP10-201ENST00000420249 274 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.48□□□□□ -2.01
NKX3-1Q99801 SRIP2-201ENST00000428470 166 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 HMGB1P9-201ENST00000429856 646 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.48□□□□□ -2.01
NKX3-1Q99801 ERLEC1P1-201ENST00000433806 578 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 RBMX2P4-201ENST00000441256 376 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 NDUFB1P2-201ENST00000449477 176 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 AC092001.1-201ENST00000453012 261 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC2.48□□□□□ -2.01
NKX3-1Q99801 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.48□□□□□ -2.01
NKX3-1Q99801 RNU7-167P-201ENST00000459160 62 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 HMGN2P26-201ENST00000463169 339 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 AC003982.1-202ENST00000469928 248 ntBASIC2.48□□□□□ -2.01
NKX3-1Q99801 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC2.48□□□□□ -2.01
NKX3-1Q99801 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.48□□□□□ -2.01
NKX3-1Q99801 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 145.3 ms