Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC025678.1-201ENST00000567861 338 ntBASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 MIR3605-201ENST00000583214 100 ntBASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 BNIP3P30-201ENST00000601184 574 ntBASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 AC007621.1-201ENST00000604544 437 ntBASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 AL670379.4-201ENST00000605279 254 ntBASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 AL021997.1-201ENST00000605757 193 ntBASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 MIR6817-201ENST00000615588 66 ntBASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 RMST_4.1-201ENST00000616886 107 ntBASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 MIR6134-201ENST00000617606 109 ntBASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 CDC27P3-201ENST00000635418 1910 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 RNU6-552P-201ENST00000362869 119 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 RNA5SP68-201ENST00000363885 119 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 SNORD21-201ENST00000383953 95 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 Y_RNA.399-201ENST00000383955 105 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 SNORA75B-201ENST00000384053 137 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 RNU6-166P-201ENST00000384371 107 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 AL356057.3-201ENST00000402607 340 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 RNA5SP111-201ENST00000411386 101 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 ZNF885P-201ENST00000420174 1098 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 RPL7P37-201ENST00000425095 738 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 SAR1AP4-201ENST00000429225 591 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 AL627311.1-201ENST00000431514 115 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 AL078601.1-201ENST00000444542 271 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 AL360271.2-201ENST00000447710 161 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 HMGB1P30-201ENST00000492455 606 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 AC113155.1-201ENST00000511141 769 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 RNU6-572P-201ENST00000516724 80 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 SNORA31.19-201ENST00000517079 126 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 AL137161.1-201ENST00000532231 390 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 AC091544.4-201ENST00000555268 342 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 AC021739.1-201ENST00000559631 174 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 LINC00933-203ENST00000559812 219 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 MIR4782-201ENST00000577987 79 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 MIR4424-201ENST00000585257 86 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 AP003465.2-201ENST00000602571 373 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 AL627309.6-201ENST00000606857 840 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 U6.42-201ENST00000618440 107 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 MIR1321-201ENST00000637766 79 ntBASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC3Q9BQI4 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 Z98749.2-208ENST00000381646 500 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 MIR578-201ENST00000384828 96 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 RNU6-750P-201ENST00000390946 107 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 AC068050.1-201ENST00000394891 380 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 AL139039.1-201ENST00000401900 692 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 RPL19P1-201ENST00000411635 428 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 OFD1P1Y-201ENST00000411756 1225 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 AL669831.1-202ENST00000428504 417 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 RPS15AP5-201ENST00000436276 388 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 GTF2IP13-201ENST00000438487 386 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 Z96811.1-201ENST00000445880 108 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 WASF1P1-201ENST00000447560 1131 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 CACYBPP2-201ENST00000453625 678 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 RPS3P1-201ENST00000456781 192 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 RPS29P20-201ENST00000489592 171 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 AC091885.1-201ENST00000506658 268 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 AC098799.2-201ENST00000509466 868 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 AC112206.3-201ENST00000514578 389 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 RNA5SP148-201ENST00000516527 94 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 AL512360.1-201ENST00000555346 234 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 AC005498.1-201ENST00000592125 465 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 AC025165.5-201ENST00000602802 578 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 MTND4LP5-201ENST00000605152 292 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 RPL23AP88-201ENST00000605759 454 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 AC087045.1-201ENST00000605856 382 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 AF250324.2-201ENST00000608299 610 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 AC093788.1-201ENST00000609356 927 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 AL354950.2-201ENST00000617939 290 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms