Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.89□□□□□ -1.95
HOXD3P31249 RNU6-593P-201ENST00000364716 112 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 SNORA9-201ENST00000384215 133 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 RNU6-842P-201ENST00000384269 107 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 MIR606-201ENST00000384851 96 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 MIR183-201ENST00000384958 110 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 MIR517A-201ENST00000385001 87 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 MIR218-2-201ENST00000385006 110 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 HLFP1-201ENST00000402375 499 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 Z99755.1-201ENST00000414048 380 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC2.89□□□□□ -1.95
HOXD3P31249 RPS15AP6-201ENST00000420703 385 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 AC097713.2-201ENST00000430199 356 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 AL645568.3-201ENST00000433683 316 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HOXD3P31249 AL137792.2-201ENST00000443484 235 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXD3P31249 AL136097.1-201ENST00000456945 913 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 SNORD5.1-201ENST00000458800 75 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 RN7SL293P-201ENST00000481765 281 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 AC090096.1-201ENST00000489168 390 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 AC069499.1-201ENST00000489433 509 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 AC113155.1-201ENST00000511141 769 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 RN7SKP18-201ENST00000516005 275 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 RNU6-327P-201ENST00000516270 127 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 RNU4ATAC7P-201ENST00000516280 125 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 Y_RNA.708-201ENST00000516950 96 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.89□□□□□ -1.95
HOXD3P31249 SNRPGP18-201ENST00000553000 214 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXD3P31249 AC011494.1-201ENST00000596454 237 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.89□□□□□ -1.95
HOXD3P31249 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
HOXD3P31249 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
HOXD3P31249 AC099506.2-201ENST00000623074 221 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 U6.105-201ENST00000637379 88 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXD3P31249 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HOXD3P31249 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HOXD3P31249 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC2.89□□□□□ -1.95
HOXD3P31249 AL049641.1-201ENST00000441055 1948 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 AL161912.2-201ENST00000565707 3007 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HOXD3P31249 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HOXD3P31249 MAPK10-253ENST00000641010 4072 ntBASIC2.88□□□□□ -1.95
HOXD3P31249 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
HOXD3P31249 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HOXD3P31249 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC2.88□□□□□ -1.95
HOXD3P31249 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.88□□□□□ -1.95
HOXD3P31249 MTND5P30-201ENST00000452896 1731 ntBASIC2.88□□□□□ -1.95
HOXD3P31249 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HOXD3P31249 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC2.88□□□□□ -1.95
HOXD3P31249 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
HOXD3P31249 Y_RNA.2-201ENST00000362330 96 ntBASIC2.88□□□□□ -1.95
HOXD3P31249 Y_RNA.5-201ENST00000362334 102 ntBASIC2.88□□□□□ -1.95
HOXD3P31249 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
HOXD3P31249 RNVU1-14-201ENST00000384770 164 ntBASIC2.88□□□□□ -1.95
HOXD3P31249 RNA5SP424-201ENST00000390988 115 ntBASIC2.88□□□□□ -1.95
HOXD3P31249 AL030996.1-201ENST00000411430 235 ntBASIC2.88□□□□□ -1.95
HOXD3P31249 UBE2Q2P12-201ENST00000414573 204 ntBASIC2.88□□□□□ -1.95
HOXD3P31249 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HOXD3P31249 AL627311.1-201ENST00000431514 115 ntBASIC2.88□□□□□ -1.95
HOXD3P31249 AL512844.2-201ENST00000433990 593 ntBASIC2.88□□□□□ -1.95
HOXD3P31249 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXD3P31249 AL031274.1-201ENST00000450334 232 ntBASIC2.88□□□□□ -1.95
HOXD3P31249 NIPA2P5-201ENST00000452282 464 ntBASIC2.88□□□□□ -1.95
HOXD3P31249 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXD3P31249 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC2.88□□□□□ -1.95
HOXD3P31249 MIR5187-201ENST00000583479 76 ntBASIC2.88□□□□□ -1.95
HOXD3P31249 AC020914.4-201ENST00000597690 277 ntBASIC2.88□□□□□ -1.95
HOXD3P31249 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.88□□□□□ -1.95
HOXD3P31249 SNORA62.6-201ENST00000606322 83 ntBASIC2.88□□□□□ -1.95
HOXD3P31249 AC116312.1-201ENST00000606841 314 ntBASIC2.88□□□□□ -1.95
HOXD3P31249 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC2.88□□□□□ -1.95
HOXD3P31249 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.88□□□□□ -1.95
HOXD3P31249 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.88□□□□□ -1.95
HOXD3P31249 MIR4727-201ENST00000622232 55 ntBASIC2.88□□□□□ -1.95
HOXD3P31249 U6.99-201ENST00000637524 83 ntBASIC2.88□□□□□ -1.95
HOXD3P31249 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
HOXD3P31249 AC119674.1-207ENST00000641355 633 ntBASIC2.88□□□□□ -1.95
HOXD3P31249 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC2.88□□□□□ -1.95
HOXD3P31249 MTND5P10-201ENST00000603719 1809 ntBASIC2.88□□□□□ -1.95
HOXD3P31249 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HOXD3P31249 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
HOXD3P31249 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXD3P31249 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
HOXD3P31249 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
HOXD3P31249 MTND5P1-201ENST00000445440 1375 ntBASIC2.87□□□□□ -1.95
HOXD3P31249 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HOXD3P31249 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HOXD3P31249 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HOXD3P31249 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.87□□□□□ -1.95
HOXD3P31249 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HOXD3P31249 SNORA63C-201ENST00000364578 129 ntBASIC2.87□□□□□ -1.95
HOXD3P31249 RNA5SP51-201ENST00000364750 119 ntBASIC2.87□□□□□ -1.95
HOXD3P31249 RNU6-325P-201ENST00000411132 105 ntBASIC2.87□□□□□ -1.95
HOXD3P31249 SNORD56-201ENST00000413522 71 ntBASIC2.87□□□□□ -1.95
HOXD3P31249 AL096701.2-201ENST00000416920 238 ntBASIC2.87□□□□□ -1.95
HOXD3P31249 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXD3P31249 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 122.3 ms