Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
HOXD3P31249 FTLP6-201ENST00000355274 422 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 MIR412-201ENST00000362142 91 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 IARS-201ENST00000375627 697 ntTSL 3 BASIC2.91□□□□□ -1.94
HOXD3P31249 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
HOXD3P31249 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
HOXD3P31249 RNU6-166P-201ENST00000384371 107 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 RNU6-692P-201ENST00000384496 107 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 RNU6-140P-201ENST00000384566 108 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 AL445529.1-201ENST00000398713 389 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 AL591034.1-201ENST00000407447 340 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 Y_RNA.623-201ENST00000411128 95 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
HOXD3P31249 SYF2P2-201ENST00000417620 583 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 AC007560.1-201ENST00000426912 237 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 AC093151.1-201ENST00000427711 313 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC2.91□□□□□ -1.94
HOXD3P31249 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.91□□□□□ -1.94
HOXD3P31249 SNRPEP9-201ENST00000436794 238 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 HMGN2P20-201ENST00000437531 273 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 Z82210.1-201ENST00000440037 231 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC2.91□□□□□ -1.94
HOXD3P31249 FTH1P25-201ENST00000447665 469 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 AL163540.1-201ENST00000485382 386 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.91□□□□□ -1.94
HOXD3P31249 AC074250.1-201ENST00000511117 192 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC2.91□□□□□ -1.94
HOXD3P31249 RNA5SP384-201ENST00000516615 116 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 RNU6-572P-201ENST00000516724 80 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 RNU1-54P-201ENST00000517181 120 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 AC069113.1-201ENST00000517763 267 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 AC090877.1-201ENST00000561418 344 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC2.91□□□□□ -1.94
HOXD3P31249 MIR3200-201ENST00000580767 85 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 AL157817.1-201ENST00000614264 790 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC2.91□□□□□ -1.94
HOXD3P31249 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC2.91□□□□□ -1.94
HOXD3P31249 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.91□□□□□ -1.94
HOXD3P31249 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
HOXD3P31249 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
HOXD3P31249 AC018555.1-201ENST00000567548 1980 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
HOXD3P31249 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
HOXD3P31249 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
HOXD3P31249 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC2.9□□□□□ -1.94
HOXD3P31249 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC2.9□□□□□ -1.94
HOXD3P31249 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.95
HOXD3P31249 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.95
HOXD3P31249 RNA5SP72-201ENST00000364442 117 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 SNORD14B-201ENST00000364533 90 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 SNORA22B-201ENST00000383876 138 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 Y_RNA.395-201ENST00000383945 109 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 RNU6-890P-201ENST00000384121 107 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 MIR10A-201ENST00000385043 110 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
HOXD3P31249 SNORA40C-201ENST00000391285 128 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 RNU2-68P-201ENST00000410878 191 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 ATG3P1-201ENST00000419507 911 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.9□□□□□ -1.95
HOXD3P31249 MTND2P23-201ENST00000422990 651 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 PMCHL1-202ENST00000423102 261 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXD3P31249 UBE2V1P4-201ENST00000425374 344 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.9□□□□□ -1.95
HOXD3P31249 AL590383.1-201ENST00000428602 75 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXD3P31249 CYCSP35-201ENST00000451978 304 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 AC092798.1-201ENST00000458542 409 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 AL133162.1-201ENST00000463228 453 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 RPS26P15-201ENST00000488067 348 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 AC018437.1-201ENST00000492214 406 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 AC097473.1-201ENST00000508142 408 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXD3P31249 RAC1P2-201ENST00000511164 579 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.9□□□□□ -1.95
HOXD3P31249 RNA5SP208-201ENST00000516156 78 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 SNORA74D-201ENST00000516404 141 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 Y_RNA.711-201ENST00000516993 102 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 RNA5SP291-201ENST00000517222 105 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXD3P31249 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC2.9□□□□□ -1.95
HOXD3P31249 MIR5047-201ENST00000579212 100 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC2.9□□□□□ -1.95
HOXD3P31249 AL137849.1-201ENST00000604767 169 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 AL160281.1-201ENST00000605307 311 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 AL121917.1-203ENST00000605534 577 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 AC019193.3-201ENST00000609144 554 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 AL110115.1-201ENST00000614396 364 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 PISRT1.1-201ENST00000616930 107 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC2.9□□□□□ -1.95
HOXD3P31249 AC005183.1-201ENST00000603687 1979 ntBASIC2.9□□□□□ -1.95
HOXD3P31249 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC2.9□□□□□ -1.95
HOXD3P31249 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
HOXD3P31249 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
HOXD3P31249 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
HOXD3P31249 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.89□□□□□ -1.95
HOXD3P31249 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC2.89□□□□□ -1.95
HOXD3P31249 AC032011.1-201ENST00000611703 1549 ntBASIC2.89□□□□□ -1.95
HOXD3P31249 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HOXD3P31249 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 124.2 ms