Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 MTND4P2-201ENST00000507767 1203 ntBASIC2.29□□□□□ -2.04
CLDN3O15551 SNORA3.4-201ENST00000515969 96 ntBASIC2.29□□□□□ -2.04
CLDN3O15551 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC2.29□□□□□ -2.04
CLDN3O15551 AL138976.2-201ENST00000563989 694 ntBASIC2.29□□□□□ -2.04
CLDN3O15551 MIR1273C-201ENST00000578669 77 ntBASIC2.29□□□□□ -2.04
CLDN3O15551 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC2.29□□□□□ -2.04
CLDN3O15551 AL359999.1-201ENST00000604513 294 ntBASIC2.29□□□□□ -2.04
CLDN3O15551 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.29□□□□□ -2.04
CLDN3O15551 AC006927.3-201ENST00000638789 384 ntBASIC2.29□□□□□ -2.04
CLDN3O15551 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
CLDN3O15551 AC138393.1-203ENST00000327086 343 ntBASIC2.28□□□□□ -2.04
CLDN3O15551 RNU6-858P-201ENST00000362436 107 ntBASIC2.28□□□□□ -2.04
CLDN3O15551 RNU6-395P-201ENST00000365662 106 ntBASIC2.28□□□□□ -2.04
CLDN3O15551 MRPL42P2-201ENST00000403169 426 ntBASIC2.28□□□□□ -2.04
CLDN3O15551 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.28□□□□□ -2.04
CLDN3O15551 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.28□□□□□ -2.04
CLDN3O15551 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.28□□□□□ -2.04
CLDN3O15551 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC2.28□□□□□ -2.04
CLDN3O15551 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.28□□□□□ -2.04
CLDN3O15551 AC008526.1-201ENST00000509149 338 ntBASIC2.28□□□□□ -2.04
CLDN3O15551 RNA5SP337-201ENST00000517007 109 ntBASIC2.28□□□□□ -2.04
CLDN3O15551 HSPE1P18-201ENST00000517602 280 ntBASIC2.28□□□□□ -2.04
CLDN3O15551 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.28□□□□□ -2.04
CLDN3O15551 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC2.28□□□□□ -2.04
CLDN3O15551 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.28□□□□□ -2.04
CLDN3O15551 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC2.28□□□□□ -2.04
CLDN3O15551 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.28□□□□□ -2.04
CLDN3O15551 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.28□□□□□ -2.04
CLDN3O15551 AC234772.3-201ENST00000602277 528 ntBASIC2.28□□□□□ -2.04
CLDN3O15551 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC2.28□□□□□ -2.04
CLDN3O15551 AL670379.10-201ENST00000604330 253 ntBASIC2.28□□□□□ -2.04
CLDN3O15551 AL355297.2-201ENST00000604792 129 ntBASIC2.28□□□□□ -2.04
CLDN3O15551 AL158032.1-201ENST00000605401 106 ntBASIC2.28□□□□□ -2.04
CLDN3O15551 AL670379.9-201ENST00000605428 253 ntBASIC2.28□□□□□ -2.04
CLDN3O15551 AC068276.1-201ENST00000605793 379 ntBASIC2.28□□□□□ -2.04
CLDN3O15551 MIR5739-201ENST00000619803 80 ntBASIC2.28□□□□□ -2.04
CLDN3O15551 AC012640.5-201ENST00000623897 319 ntBASIC2.28□□□□□ -2.04
CLDN3O15551 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.28□□□□□ -2.04
CLDN3O15551 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.28□□□□□ -2.04
CLDN3O15551 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.28□□□□□ -2.04
CLDN3O15551 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.28□□□□□ -2.05
CLDN3O15551 AC080100.1-201ENST00000624239 5356 ntBASIC2.27□□□□□ -2.05
CLDN3O15551 HSPE1P11-201ENST00000339579 310 ntBASIC2.27□□□□□ -2.05
CLDN3O15551 SNORD56.2-201ENST00000363242 71 ntBASIC2.27□□□□□ -2.05
CLDN3O15551 RNU6-166P-201ENST00000384371 107 ntBASIC2.27□□□□□ -2.05
CLDN3O15551 MIR518D-201ENST00000385014 87 ntBASIC2.27□□□□□ -2.05
CLDN3O15551 RNA5SP270-201ENST00000411361 118 ntBASIC2.27□□□□□ -2.05
CLDN3O15551 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.27□□□□□ -2.05
CLDN3O15551 AL353621.1-201ENST00000418219 243 ntBASIC2.27□□□□□ -2.05
CLDN3O15551 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.27□□□□□ -2.05
CLDN3O15551 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.27□□□□□ -2.05
CLDN3O15551 AC137499.1-201ENST00000427602 88 ntBASIC2.27□□□□□ -2.05
CLDN3O15551 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC2.27□□□□□ -2.05
CLDN3O15551 AL512286.1-201ENST00000439244 400 ntBASIC2.27□□□□□ -2.05
CLDN3O15551 AL513124.1-201ENST00000450410 614 ntBASIC2.27□□□□□ -2.05
CLDN3O15551 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.27□□□□□ -2.05
CLDN3O15551 AC003071.1-201ENST00000451219 789 ntBASIC2.27□□□□□ -2.05
CLDN3O15551 AC018437.1-201ENST00000492214 406 ntBASIC2.27□□□□□ -2.05
CLDN3O15551 AC092436.1-201ENST00000506450 503 ntBASIC2.27□□□□□ -2.05
CLDN3O15551 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.27□□□□□ -2.05
CLDN3O15551 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC2.27□□□□□ -2.05
CLDN3O15551 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.27□□□□□ -2.05
CLDN3O15551 RNU6-415P-201ENST00000516252 97 ntBASIC2.27□□□□□ -2.05
CLDN3O15551 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.27□□□□□ -2.05
CLDN3O15551 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.27□□□□□ -2.05
CLDN3O15551 AC002400.1-201ENST00000569310 726 ntBASIC2.27□□□□□ -2.05
CLDN3O15551 MIR5002-201ENST00000584713 97 ntBASIC2.27□□□□□ -2.05
CLDN3O15551 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
CLDN3O15551 AL161423.1-201ENST00000613700 262 ntBASIC2.27□□□□□ -2.05
CLDN3O15551 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC2.27□□□□□ -2.05
CLDN3O15551 AC024940.5-201ENST00000622889 474 ntBASIC2.27□□□□□ -2.05
CLDN3O15551 AC138627.2-201ENST00000624202 601 ntBASIC2.27□□□□□ -2.05
CLDN3O15551 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.26□□□□□ -2.05
CLDN3O15551 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.26□□□□□ -2.05
CLDN3O15551 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.26□□□□□ -2.05
CLDN3O15551 AC073343.1-201ENST00000328239 651 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 OR56A5-201ENST00000340110 738 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
CLDN3O15551 RNU1-148P-201ENST00000384472 162 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 SNORD115.1-201ENST00000391109 76 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
CLDN3O15551 AL355497.1-201ENST00000406262 551 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 FTH1P15-201ENST00000406984 280 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 USP9YP27-201ENST00000418455 438 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC2.26□□□□□ -2.05
CLDN3O15551 AL445646.1-201ENST00000431784 216 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 AL591719.1-201ENST00000444669 744 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.26□□□□□ -2.05
CLDN3O15551 AC012308.1-201ENST00000451232 178 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.26□□□□□ -2.05
CLDN3O15551 AL583843.1-201ENST00000456070 346 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 AC010587.1-201ENST00000505809 469 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC2.26□□□□□ -2.05
CLDN3O15551 RNU7-193P-201ENST00000516723 65 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 AP003122.4-201ENST00000530980 758 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 AC079598.5-201ENST00000547460 117 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC2.26□□□□□ -2.05
CLDN3O15551 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC2.26□□□□□ -2.05
CLDN3O15551 MIR5697-201ENST00000578045 78 ntBASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 142 ms