Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 RNU6-607P-201ENST00000411283 108 ntBASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 FABP5P14-201ENST00000437273 393 ntBASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 AC006026.2-201ENST00000457376 180 ntBASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 AC146507.2-201ENST00000460608 476 ntBASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 BTF3P12-201ENST00000519620 469 ntBASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 MIR4765-201ENST00000585007 77 ntBASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 AL670379.10-201ENST00000604330 253 ntBASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 AL670379.9-201ENST00000605428 253 ntBASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 AC073657.2-201ENST00000605661 303 ntBASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 AP001596.2-201ENST00000608410 312 ntBASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 AL157817.1-201ENST00000614264 790 ntBASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 AC026585.1-201ENST00000619582 524 ntBASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 AL359880.1-201ENST00000621879 266 ntBASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 AL031601.2-202ENST00000622650 282 ntBASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 AC010329.5-201ENST00000623497 2174 ntBASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 AC138393.1-203ENST00000327086 343 ntBASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 SNORA38.1-201ENST00000364172 131 ntBASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 SNORA46-201ENST00000384762 135 ntBASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 MIR491-201ENST00000384877 84 ntBASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 FTH1P15-201ENST00000406984 280 ntBASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 AL669831.1-202ENST00000428504 417 ntBASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 GTF2IP13-201ENST00000438487 386 ntBASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 PRPS1P1-201ENST00000445305 876 ntBASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 AC073415.1-201ENST00000449240 153 ntBASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 AP001324.2-201ENST00000461163 319 ntBASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 AL121769.1-201ENST00000469473 401 ntBASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 MRPL42P6-201ENST00000486397 371 ntBASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 AC011005.2-201ENST00000487324 359 ntBASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 SNORA31.6-201ENST00000516241 130 ntBASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 Y_RNA.687-201ENST00000516558 91 ntBASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 AC104383.1-201ENST00000530297 370 ntBASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 AL137161.1-201ENST00000532231 390 ntBASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 AL442067.2-201ENST00000614033 363 ntBASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 RMST_4.1-201ENST00000616886 107 ntBASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.27□□□□□ -1.89
HERPUD2Q9BSE4 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 SET-203ENST00000372688 801 ntTSL 2 BASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 SNORA9-201ENST00000384215 133 ntBASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 RNU6-1127P-201ENST00000384580 107 ntBASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 AL513475.1-201ENST00000406602 315 ntBASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 AL606923.1-201ENST00000406616 190 ntBASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 Z98742.2-201ENST00000431564 187 ntBASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 AC006028.1-201ENST00000438379 402 ntBASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 AC016691.1-201ENST00000441321 413 ntBASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 BX510359.1-201ENST00000456973 237 ntBASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 RNU6-261P-201ENST00000459506 102 ntBASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 RPL22P13-201ENST00000493291 347 ntBASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 AC079140.5-201ENST00000507882 310 ntBASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 AC009646.1-201ENST00000510455 318 ntBASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 AL117351.2-201ENST00000513571 157 ntBASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 Y_RNA.655-201ENST00000515919 96 ntBASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 SNORA40.12-201ENST00000516329 111 ntBASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 RNU6-506P-201ENST00000516553 94 ntBASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 RNU6-314P-201ENST00000516574 104 ntBASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 MTND4P7-201ENST00000523876 130 ntBASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 AC027807.1-201ENST00000559921 996 ntBASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 AC009163.5-201ENST00000575421 637 ntBASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 LRRC37A5P-203ENST00000580181 585 ntBASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 Z82243.1-201ENST00000609432 473 ntBASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 AC068792.1-201ENST00000621354 417 ntBASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms