Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.48□□□□□ -2.33
USF3Q68DE3 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
USF3Q68DE3 AC110491.1-201ENST00000562191 2010 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 RNU6-741P-201ENST00000383889 107 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 MIR515-2-201ENST00000384883 83 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 MIR515-1-201ENST00000384884 83 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 FO393419.3-201ENST00000428741 282 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 AL591704.1-201ENST00000432574 275 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC0.48□□□□□ -2.33
USF3Q68DE3 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC0.48□□□□□ -2.33
USF3Q68DE3 AC104073.1-201ENST00000451988 151 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 PNPLA4P1-201ENST00000458328 305 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 BOLA3P3-201ENST00000505182 232 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 RNU6-488P-201ENST00000515918 99 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.48□□□□□ -2.33
USF3Q68DE3 AC027104.1-201ENST00000563702 681 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 MIR4422-201ENST00000581938 83 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC0.48□□□□□ -2.33
USF3Q68DE3 AC008121.1-201ENST00000603244 268 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC0.48□□□□□ -2.33
USF3Q68DE3 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC0.48□□□□□ -2.33
USF3Q68DE3 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC0.48□□□□□ -2.33
USF3Q68DE3 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC0.48□□□□□ -2.33
USF3Q68DE3 AC121333.1-201ENST00000567488 2709 ntBASIC0.47□□□□□ -2.33
USF3Q68DE3 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC0.47□□□□□ -2.33
USF3Q68DE3 AL391516.1-201ENST00000554380 2449 ntBASIC0.47□□□□□ -2.33
USF3Q68DE3 ELL2P3-201ENST00000457883 1602 ntBASIC0.47□□□□□ -2.33
USF3Q68DE3 Y_RNA.294-201ENST00000364916 102 ntBASIC0.47□□□□□ -2.33
USF3Q68DE3 Y_RNA.412-201ENST00000384001 104 ntBASIC0.47□□□□□ -2.33
USF3Q68DE3 RNU11-3P-201ENST00000391111 133 ntBASIC0.47□□□□□ -2.33
USF3Q68DE3 BTF3L4P2-201ENST00000392798 346 ntBASIC0.47□□□□□ -2.33
USF3Q68DE3 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
USF3Q68DE3 LINC01347-201ENST00000417964 355 ntBASIC0.47□□□□□ -2.33
USF3Q68DE3 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC0.47□□□□□ -2.33
USF3Q68DE3 RAC1P7-201ENST00000445367 377 ntBASIC0.47□□□□□ -2.33
USF3Q68DE3 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC0.47□□□□□ -2.33
USF3Q68DE3 GTF2IP12-201ENST00000456547 356 ntBASIC0.47□□□□□ -2.33
USF3Q68DE3 RNU6-775P-201ENST00000459318 96 ntBASIC0.47□□□□□ -2.33
USF3Q68DE3 AC015724.1-201ENST00000478577 156 ntBASIC0.47□□□□□ -2.33
USF3Q68DE3 RNA5SP137-201ENST00000516833 135 ntBASIC0.47□□□□□ -2.33
USF3Q68DE3 RNA5SP337-201ENST00000517007 109 ntBASIC0.47□□□□□ -2.33
USF3Q68DE3 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC0.47□□□□□ -2.33
USF3Q68DE3 AC124947.2-202ENST00000552735 133 ntBASIC0.47□□□□□ -2.33
USF3Q68DE3 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC0.47□□□□□ -2.33
USF3Q68DE3 AC110792.4-201ENST00000609843 298 ntBASIC0.47□□□□□ -2.33
USF3Q68DE3 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC0.47□□□□□ -2.33
USF3Q68DE3 Z99571.1-201ENST00000636677 394 ntBASIC0.47□□□□□ -2.33
USF3Q68DE3 HSBP1P2-201ENST00000299671 229 ntBASIC0.46□□□□□ -2.34
USF3Q68DE3 AL591043.1-201ENST00000432461 424 ntBASIC0.46□□□□□ -2.34
USF3Q68DE3 USP9YP24-201ENST00000434374 697 ntBASIC0.46□□□□□ -2.34
USF3Q68DE3 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC0.46□□□□□ -2.34
USF3Q68DE3 RPL26P6-201ENST00000440913 438 ntBASIC0.46□□□□□ -2.34
USF3Q68DE3 RPL23AP35-201ENST00000451906 501 ntBASIC0.46□□□□□ -2.34
USF3Q68DE3 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC0.46□□□□□ -2.34
USF3Q68DE3 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC0.46□□□□□ -2.34
USF3Q68DE3 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC0.46□□□□□ -2.34
USF3Q68DE3 RNA5SP112-201ENST00000515937 99 ntBASIC0.46□□□□□ -2.34
USF3Q68DE3 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC0.46□□□□□ -2.34
USF3Q68DE3 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC0.46□□□□□ -2.34
USF3Q68DE3 AC005668.1-201ENST00000571142 476 ntBASIC0.46□□□□□ -2.34
USF3Q68DE3 AC106800.4-201ENST00000614905 153 ntBASIC0.46□□□□□ -2.34
USF3Q68DE3 AC018926.3-201ENST00000618841 406 ntBASIC0.46□□□□□ -2.34
USF3Q68DE3 AC068787.1-201ENST00000623908 691 ntBASIC0.46□□□□□ -2.34
USF3Q68DE3 AC091965.5-201ENST00000624785 342 ntBASIC0.46□□□□□ -2.34
USF3Q68DE3 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC0.46□□□□□ -2.34
USF3Q68DE3 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC0.46□□□□□ -2.34
USF3Q68DE3 RNU6-251P-201ENST00000363235 104 ntBASIC0.46□□□□□ -2.34
USF3Q68DE3 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC0.46□□□□□ -2.34
USF3Q68DE3 RNA5SP212-201ENST00000391223 107 ntBASIC0.46□□□□□ -2.34
USF3Q68DE3 RNU2-49P-201ENST00000410666 184 ntBASIC0.46□□□□□ -2.34
USF3Q68DE3 BPY2DP-201ENST00000422208 265 ntBASIC0.46□□□□□ -2.34
USF3Q68DE3 AL161651.1-201ENST00000440882 223 ntBASIC0.46□□□□□ -2.34
USF3Q68DE3 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC0.46□□□□□ -2.34
USF3Q68DE3 RPL26P9-201ENST00000457466 433 ntBASIC0.46□□□□□ -2.34
USF3Q68DE3 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.46□□□□□ -2.34
USF3Q68DE3 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC0.46□□□□□ -2.34
USF3Q68DE3 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC0.46□□□□□ -2.34
USF3Q68DE3 SNORA4.4-201ENST00000515921 135 ntBASIC0.46□□□□□ -2.34
USF3Q68DE3 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC0.46□□□□□ -2.34
USF3Q68DE3 AL391813.1-201ENST00000603098 260 ntBASIC0.46□□□□□ -2.34
USF3Q68DE3 ELOCP5-201ENST00000604924 333 ntBASIC0.46□□□□□ -2.34
USF3Q68DE3 HMGB1P51-201ENST00000605166 638 ntBASIC0.46□□□□□ -2.34
USF3Q68DE3 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC0.46□□□□□ -2.34
USF3Q68DE3 AC087821.2-201ENST00000637086 450 ntBASIC0.46□□□□□ -2.34
USF3Q68DE3 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC0.46□□□□□ -2.34
USF3Q68DE3 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
USF3Q68DE3 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC0.45□□□□□ -2.34
USF3Q68DE3 MIR518A2-201ENST00000384966 87 ntBASIC0.45□□□□□ -2.34
USF3Q68DE3 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC0.45□□□□□ -2.34
USF3Q68DE3 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
USF3Q68DE3 AC098591.2-201ENST00000510152 315 ntBASIC0.45□□□□□ -2.34
USF3Q68DE3 RNU4-18P-201ENST00000516751 149 ntBASIC0.45□□□□□ -2.34
USF3Q68DE3 AC104997.1-201ENST00000519761 717 ntBASIC0.45□□□□□ -2.34
USF3Q68DE3 HSPA8P13-201ENST00000523715 472 ntBASIC0.45□□□□□ -2.34
USF3Q68DE3 OR6C7P-201ENST00000547875 934 ntBASIC0.45□□□□□ -2.34
USF3Q68DE3 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC0.45□□□□□ -2.34
USF3Q68DE3 AC026271.5-201ENST00000577873 130 ntBASIC0.45□□□□□ -2.34
USF3Q68DE3 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.45□□□□□ -2.34
USF3Q68DE3 7SK.7-201ENST00000603504 247 ntBASIC0.45□□□□□ -2.34
USF3Q68DE3 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC0.45□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms