Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 OARD1-209ENST00000471367 401 ntTSL 2 BASIC1.02□□□□□ -2.25
CHD3Q12873 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC1.02□□□□□ -2.25
CHD3Q12873 RNA5SP112-201ENST00000515937 99 ntBASIC1.02□□□□□ -2.25
CHD3Q12873 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.02□□□□□ -2.25
CHD3Q12873 AL031274.2-201ENST00000599419 203 ntBASIC1.02□□□□□ -2.25
CHD3Q12873 PRR13P7-201ENST00000605538 430 ntBASIC1.02□□□□□ -2.25
CHD3Q12873 RNU6-91P-201ENST00000607774 107 ntBASIC1.02□□□□□ -2.25
CHD3Q12873 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.02□□□□□ -2.25
CHD3Q12873 AC009268.2-201ENST00000621925 457 ntBASIC1.02□□□□□ -2.25
CHD3Q12873 AL356473.1-201ENST00000406203 1408 ntBASIC1.02□□□□□ -2.25
CHD3Q12873 AL138713.1-201ENST00000624026 2130 ntBASIC1.02□□□□□ -2.25
CHD3Q12873 Y_RNA.30-201ENST00000362572 97 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 RNU6-115P-201ENST00000364310 107 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 RNU4-38P-201ENST00000364472 129 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 AC078974.1-201ENST00000411597 223 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 OR9R1P-201ENST00000412200 877 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 RPL26P27-201ENST00000414397 437 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC1.01□□□□□ -2.25
CHD3Q12873 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC1.01□□□□□ -2.25
CHD3Q12873 AC118469.1-201ENST00000442943 488 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 AP1S2P1-201ENST00000457344 379 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 MRPS17P3-201ENST00000465453 385 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 RNU6-362P-201ENST00000516736 90 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 RNA5SP291-201ENST00000517222 105 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC1.01□□□□□ -2.25
CHD3Q12873 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC1.01□□□□□ -2.25
CHD3Q12873 MIR3126-201ENST00000577443 74 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 RN7SL793P-201ENST00000583259 296 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 AC090330.1-201ENST00000588646 764 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 MIR520E-201ENST00000384867 87 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 TPMTP2-201ENST00000414372 726 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC1.01□□□□□ -2.25
CHD3Q12873 PPP1R11P2-201ENST00000423543 382 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 PTGES3P4-201ENST00000426243 356 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 MTCO3P5-201ENST00000433620 714 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC1.01□□□□□ -2.25
CHD3Q12873 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC1.01□□□□□ -2.25
CHD3Q12873 AC092427.1-201ENST00000439177 601 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC1.01□□□□□ -2.25
CHD3Q12873 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC1.01□□□□□ -2.25
CHD3Q12873 AC118282.2-201ENST00000508739 374 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 AC010460.2-201ENST00000509054 677 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 TPT1P8-201ENST00000510120 555 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.01□□□□□ -2.25
CHD3Q12873 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC1.01□□□□□ -2.25
CHD3Q12873 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.01□□□□□ -2.25
CHD3Q12873 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
CHD3Q12873 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.01□□□□□ -2.25
CHD3Q12873 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC1.01□□□□□ -2.25
CHD3Q12873 AL121821.2-201ENST00000556081 394 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 AL360085.1-201ENST00000604713 532 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 ELOCP5-201ENST00000604924 333 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 AC016925.2-201ENST00000605108 242 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 AC004805.2-201ENST00000605382 482 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 AL157770.1-201ENST00000623049 439 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 SUCLA2P2-201ENST00000417269 1309 ntBASIC1.01□□□□□ -2.25
CHD3Q12873 RNA5SP276-201ENST00000362580 94 ntBASIC1□□□□□ -2.25
CHD3Q12873 RNU6-839P-201ENST00000363347 108 ntBASIC1□□□□□ -2.25
CHD3Q12873 SNORD116-23-201ENST00000384645 92 ntBASIC1□□□□□ -2.25
CHD3Q12873 MIR29C-201ENST00000385231 88 ntBASIC1□□□□□ -2.25
CHD3Q12873 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC1□□□□□ -2.25
CHD3Q12873 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1□□□□□ -2.25
CHD3Q12873 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1□□□□□ -2.25
CHD3Q12873 MTND2P29-201ENST00000438595 412 ntBASIC1□□□□□ -2.25
CHD3Q12873 MTND6P13-201ENST00000443510 523 ntBASIC1□□□□□ -2.25
CHD3Q12873 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1□□□□□ -2.25
CHD3Q12873 TPRKBP1-201ENST00000456243 481 ntBASIC1□□□□□ -2.25
CHD3Q12873 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1□□□□□ -2.25
CHD3Q12873 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1□□□□□ -2.25
CHD3Q12873 AC021146.8-201ENST00000507455 733 ntBASIC1□□□□□ -2.25
CHD3Q12873 AC093677.1-201ENST00000514414 678 ntBASIC1□□□□□ -2.25
CHD3Q12873 RN7SKP179-201ENST00000516126 217 ntBASIC1□□□□□ -2.25
CHD3Q12873 NRON-201ENST00000517270 370 ntBASIC1□□□□□ -2.25
CHD3Q12873 SLC2A13P1-201ENST00000531560 322 ntBASIC1□□□□□ -2.25
CHD3Q12873 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC1□□□□□ -2.25
CHD3Q12873 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC1□□□□□ -2.25
CHD3Q12873 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC1□□□□□ -2.25
CHD3Q12873 BNIP3P25-201ENST00000596023 559 ntBASIC1□□□□□ -2.25
CHD3Q12873 MTCYBP22-201ENST00000603788 447 ntBASIC1□□□□□ -2.25
CHD3Q12873 AL583856.2-201ENST00000606298 543 ntBASIC1□□□□□ -2.25
CHD3Q12873 Y_RNA.245-201ENST00000364493 95 ntBASIC0.99□□□□□ -2.25
CHD3Q12873 SNORD115-48-201ENST00000364764 76 ntBASIC0.99□□□□□ -2.25
CHD3Q12873 Y_RNA.393-201ENST00000383936 102 ntBASIC0.99□□□□□ -2.25
CHD3Q12873 MIR217-201ENST00000384817 110 ntBASIC0.99□□□□□ -2.25
CHD3Q12873 SNORA40.6-201ENST00000391153 128 ntBASIC0.99□□□□□ -2.25
CHD3Q12873 RNU2-63P-201ENST00000410792 194 ntBASIC0.99□□□□□ -2.25
CHD3Q12873 RPL21P24-201ENST00000413752 448 ntBASIC0.99□□□□□ -2.25
CHD3Q12873 MTND4LP7-201ENST00000431728 294 ntBASIC0.99□□□□□ -2.25
CHD3Q12873 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC0.99□□□□□ -2.25
CHD3Q12873 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC0.99□□□□□ -2.25
CHD3Q12873 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC0.99□□□□□ -2.25
CHD3Q12873 RNU6-581P-201ENST00000516214 105 ntBASIC0.99□□□□□ -2.25
CHD3Q12873 AC107953.1-201ENST00000522216 297 ntBASIC0.99□□□□□ -2.25
CHD3Q12873 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC0.99□□□□□ -2.25
CHD3Q12873 AC006199.1-201ENST00000548728 219 ntBASIC0.99□□□□□ -2.25
CHD3Q12873 AC090502.2-201ENST00000549267 280 ntBASIC0.99□□□□□ -2.25
CHD3Q12873 LINC00557-201ENST00000563184 1279 ntBASIC0.99□□□□□ -2.25
CHD3Q12873 AC068276.1-201ENST00000605793 379 ntBASIC0.99□□□□□ -2.25
CHD3Q12873 AL390208.1-201ENST00000605885 644 ntBASIC0.99□□□□□ -2.25
CHD3Q12873 AC092953.2-201ENST00000608000 699 ntBASIC0.99□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms