Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ZNF519P1-201ENST00000449011 1626 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 ZNF807-201ENST00000328088 1707 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 FAM35BP-202ENST00000497389 3337 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 RNU6-1303P-201ENST00000364841 107 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 RNU6-140P-201ENST00000384566 108 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 PTMAP5-201ENST00000393073 333 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 RN7SKP158-201ENST00000410453 326 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 RN7SKP53-201ENST00000411337 315 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 DBIP2-201ENST00000419076 262 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 AC236972.2-201ENST00000434979 310 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 AC005019.1-201ENST00000436455 431 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 AL359672.1-201ENST00000442302 409 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 MRPS31P2-201ENST00000451581 518 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 CYCSP35-201ENST00000451978 304 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 SNORD105B-201ENST00000458770 79 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 RNU7-170P-201ENST00000459303 61 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 RN7SL594P-201ENST00000470590 287 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 AL135752.1-201ENST00000479477 471 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 MTND5P5-201ENST00000503764 376 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 HMGN1P13-201ENST00000505795 138 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 AC008526.1-201ENST00000509149 338 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 COPS8P3-201ENST00000526024 482 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 AC044792.1-201ENST00000593294 196 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 AL645944.1-201ENST00000603857 493 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 AC135507.2-201ENST00000612443 309 ntBASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
PTCHD3Q3KNS1 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 AC093908.1-201ENST00000623125 8092 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 RNU6-562P-201ENST00000362731 107 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 Y_RNA.324-201ENST00000365165 102 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 SNORA75B-201ENST00000384053 137 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 RNU6-214P-201ENST00000384130 107 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 MIR490-201ENST00000384865 128 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 MIR325-201ENST00000385260 98 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 SNORA40C-201ENST00000391285 128 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 ATG3P1-201ENST00000419507 911 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 AL627311.1-201ENST00000431514 115 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 AC092573.2-201ENST00000434546 243 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 FABP5P14-201ENST00000437273 393 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 Y_RNA.635-201ENST00000459041 101 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 AC026801.1-201ENST00000497178 464 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 RNU1-86P-201ENST00000516108 154 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 RNU1-107P-201ENST00000516617 154 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 AC025755.1-201ENST00000521306 278 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 AC026333.2-201ENST00000542164 106 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 HMGB1P14-201ENST00000557424 591 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 MIR4790-201ENST00000577799 79 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 AC138761.3-201ENST00000579993 334 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 AC007938.3-201ENST00000604965 623 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 AL050343.2-201ENST00000607338 280 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 AC022149.2-201ENST00000621061 203 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 U4.6-201ENST00000621618 127 ntBASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
PTCHD3Q3KNS1 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 FRG1CP-201ENST00000358464 769 ntBASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 Y_RNA.67-201ENST00000362870 100 ntBASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 RNU6-1011P-201ENST00000384668 107 ntBASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 MIR184-201ENST00000384962 84 ntBASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 AL591034.1-201ENST00000407447 340 ntBASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 MIR548F5-201ENST00000408421 86 ntBASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 Y_RNA.623-201ENST00000411128 95 ntBASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 RPL37P10-201ENST00000412884 288 ntBASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 AL159987.2-201ENST00000432754 307 ntBASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 AL645568.3-201ENST00000433683 316 ntBASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 RPS3AP52-201ENST00000435639 297 ntBASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 NDUFB9P3-201ENST00000521269 501 ntBASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 AC007458.1-201ENST00000542812 373 ntBASIC3.42□□□□□ -1.86
PTCHD3Q3KNS1 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 141.1 ms