Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC073308.1-201ENST00000623696 305 ntBASIC0.55□□□□□ -2.32
USF3Q68DE3 AL359854.1-201ENST00000614203 1594 ntBASIC0.55□□□□□ -2.32
USF3Q68DE3 RNU6-217P-201ENST00000384164 104 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 RNU6-452P-201ENST00000384406 107 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 RNU6-1035P-201ENST00000384477 107 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 RNU6-748P-201ENST00000384648 107 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC0.54□□□□□ -2.32
USF3Q68DE3 ZNF92P1Y-201ENST00000415010 1191 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC0.54□□□□□ -2.32
USF3Q68DE3 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC0.54□□□□□ -2.32
USF3Q68DE3 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC0.54□□□□□ -2.32
USF3Q68DE3 AC241584.1-201ENST00000438469 1241 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 AC092393.1-201ENST00000439625 742 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 AL096803.2-201ENST00000450032 677 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC0.54□□□□□ -2.32
USF3Q68DE3 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
USF3Q68DE3 AC008751.2-201ENST00000597885 980 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 DUXAP11-201ENST00000603858 526 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 AL136313.1-201ENST00000624804 202 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 HAUS6P2-201ENST00000433254 2404 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC0.54□□□□□ -2.32
USF3Q68DE3 ZNF29P-201ENST00000225587 168 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 OR4G2P-201ENST00000328113 903 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC0.54□□□□□ -2.32
USF3Q68DE3 RNU6-1151P-201ENST00000384684 107 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 MT-TC-201ENST00000387405 66 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 AC096649.2-201ENST00000416186 393 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 AL035410.1-201ENST00000427409 427 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC0.54□□□□□ -2.32
USF3Q68DE3 AC092573.2-201ENST00000434546 243 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 AL035666.1-201ENST00000446195 348 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC0.54□□□□□ -2.32
USF3Q68DE3 RNU6-229P-201ENST00000516614 102 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 RNU4ATAC10P-201ENST00000516967 122 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
USF3Q68DE3 AP003484.1-201ENST00000530974 250 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC0.54□□□□□ -2.32
USF3Q68DE3 MIR4765-201ENST00000585007 77 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 AC068276.1-201ENST00000605793 379 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 AL138478.1-201ENST00000612252 832 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 AC024595.1-201ENST00000623088 387 ntBASIC0.54□□□□□ -2.32
USF3Q68DE3 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC0.53□□□□□ -2.32
USF3Q68DE3 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC0.53□□□□□ -2.32
USF3Q68DE3 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC0.53□□□□□ -2.32
USF3Q68DE3 RPL39P28-201ENST00000465655 155 ntBASIC0.53□□□□□ -2.32
USF3Q68DE3 AC034114.1-201ENST00000520293 285 ntBASIC0.53□□□□□ -2.32
USF3Q68DE3 OR5B19P-201ENST00000531766 928 ntBASIC0.53□□□□□ -2.32
USF3Q68DE3 AC069294.1-201ENST00000608397 350 ntBASIC0.53□□□□□ -2.32
USF3Q68DE3 AL589743.7-201ENST00000612637 233 ntBASIC0.53□□□□□ -2.32
USF3Q68DE3 AC008498.1-201ENST00000613012 531 ntBASIC0.53□□□□□ -2.32
USF3Q68DE3 AL590410.1-201ENST00000617925 333 ntBASIC0.53□□□□□ -2.32
USF3Q68DE3 AC009318.4-201ENST00000620496 486 ntBASIC0.53□□□□□ -2.32
USF3Q68DE3 AL109659.3-201ENST00000624985 950 ntBASIC0.53□□□□□ -2.32
USF3Q68DE3 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.53□□□□□ -2.32
USF3Q68DE3 MTND5P11-201ENST00000511037 1812 ntBASIC0.53□□□□□ -2.32
USF3Q68DE3 AL442644.1-201ENST00000454390 3105 ntBASIC0.53□□□□□ -2.32
USF3Q68DE3 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC0.53□□□□□ -2.33
USF3Q68DE3 RNU6-16P-201ENST00000384385 107 ntBASIC0.53□□□□□ -2.33
USF3Q68DE3 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC0.53□□□□□ -2.33
USF3Q68DE3 AC245047.4-201ENST00000433189 144 ntBASIC0.53□□□□□ -2.33
USF3Q68DE3 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.53□□□□□ -2.33
USF3Q68DE3 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC0.53□□□□□ -2.33
USF3Q68DE3 AC138853.1-201ENST00000503549 823 ntBASIC0.53□□□□□ -2.33
USF3Q68DE3 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC0.53□□□□□ -2.33
USF3Q68DE3 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC0.53□□□□□ -2.33
USF3Q68DE3 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC0.53□□□□□ -2.33
USF3Q68DE3 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC0.53□□□□□ -2.33
USF3Q68DE3 AC012669.1-201ENST00000603209 283 ntBASIC0.53□□□□□ -2.33
USF3Q68DE3 MTND4LP5-201ENST00000605152 292 ntBASIC0.53□□□□□ -2.33
USF3Q68DE3 uc_338.14-201ENST00000613162 166 ntBASIC0.53□□□□□ -2.33
USF3Q68DE3 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC0.52□□□□□ -2.33
USF3Q68DE3 Y_RNA.274-201ENST00000364714 101 ntBASIC0.52□□□□□ -2.33
USF3Q68DE3 RNU6-1187P-201ENST00000364771 110 ntBASIC0.52□□□□□ -2.33
USF3Q68DE3 SNORA25.8-201ENST00000364831 128 ntBASIC0.52□□□□□ -2.33
USF3Q68DE3 RNU2-70P-201ENST00000410718 179 ntBASIC0.52□□□□□ -2.33
USF3Q68DE3 RNU2-63P-201ENST00000410792 194 ntBASIC0.52□□□□□ -2.33
USF3Q68DE3 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC0.52□□□□□ -2.33
USF3Q68DE3 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC0.52□□□□□ -2.33
USF3Q68DE3 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC0.52□□□□□ -2.33
USF3Q68DE3 AC005908.1-201ENST00000468701 347 ntBASIC0.52□□□□□ -2.33
USF3Q68DE3 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC0.52□□□□□ -2.33
USF3Q68DE3 RNU11-2P-201ENST00000516898 142 ntBASIC0.52□□□□□ -2.33
USF3Q68DE3 AL138963.2-201ENST00000605137 226 ntBASIC0.52□□□□□ -2.33
USF3Q68DE3 AC004775.1-201ENST00000607389 753 ntBASIC0.52□□□□□ -2.33
USF3Q68DE3 AC007349.4-201ENST00000608114 532 ntBASIC0.52□□□□□ -2.33
USF3Q68DE3 RNU6-270P-201ENST00000364131 105 ntBASIC0.52□□□□□ -2.33
USF3Q68DE3 AC009310.1-201ENST00000414414 451 ntBASIC0.52□□□□□ -2.33
USF3Q68DE3 AC083875.1-201ENST00000419509 405 ntBASIC0.52□□□□□ -2.33
USF3Q68DE3 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC0.52□□□□□ -2.33
USF3Q68DE3 RPL23AP6-201ENST00000446637 472 ntBASIC0.52□□□□□ -2.33
USF3Q68DE3 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC0.52□□□□□ -2.33
USF3Q68DE3 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC0.52□□□□□ -2.33
USF3Q68DE3 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC0.52□□□□□ -2.33
USF3Q68DE3 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC0.52□□□□□ -2.33
USF3Q68DE3 AC093770.1-201ENST00000511559 571 ntBASIC0.52□□□□□ -2.33
USF3Q68DE3 SNORA31.6-201ENST00000516241 130 ntBASIC0.52□□□□□ -2.33
USF3Q68DE3 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC0.52□□□□□ -2.33
USF3Q68DE3 C1DP5-201ENST00000525775 383 ntBASIC0.52□□□□□ -2.33
USF3Q68DE3 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC0.52□□□□□ -2.33
USF3Q68DE3 AP005212.4-201ENST00000614206 710 ntBASIC0.52□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms